Methods for cytosolic and nuclear protein extraction were as described before.
8 Endothelial cells were grown in 100-mm-diameter dishes and treated as indicated. At the end of the treatment time, the cells were collected and extracted by different lysis buffers as follows: For cytosolic β-catenin analysis, a detergent-free isotonic buffer (10 mM Tris-HCl [pH 7.4], 140 mM NaCl, 2 mM DTT, 5 mM EDTA, 50 mM NaF, and 10% protease inhibitor cocktail containing AEBSF, bestatin, aprotinin, E-64, pepstatin-A, and leupeptin) was used. The cells were homogenized in ice-cold buffer in a tight-fitting homogenizer (Dounce; Bellco Glass Co., Vineland, NJ) and centrifuged for 5 minutes at 2000
g. The supernatant was collected and centrifuged for 60 minutes at 100,000
g to obtain the cytosolic (supernatant) fractions. For extraction of nuclear proteins, the cells were rinsed two times with ice-cold PBS containing 1 mM PMSF and 1 mM sodium orthovanadate, scraped in the same buffer, collected and centrifuged at 500
g for 5 minutes. The cell pellet was suspended in a 20-fold pellet volume of hypotonic buffer (10 mM Tris-HCl [pH 6.8], 3 mM MgCl
2, 1 mM PMSF, and 1 mM sodium orthovanadate) and incubated for 15 minutes on ice. The suspension was added drop-wise into an equal volume of extraction buffer consisting of the hypotonic buffer and 0.2% NP-40. The mixture was allowed to rest in the ice bath for an additional 15 minutes and then sonicated for three short strokes of 1 second each at 4 MHz. The suspension was then layered over an equal volume of ice-cold solution of 350 mM sucrose in hypotonic buffer. The test tubes were centrifuged at 500
g for 8 minutes to pellet the cell nuclei. The nuclear pellet was further washed in 1.2 mL of extraction buffer, incubated for 15 minutes on ice, and centrifuged at 500
g. The nuclear pellet was dissolved in Tris-SDS buffer (1% SDS and 2 mM EDTA in 10 mM Tris; pH 6.8), boiled for 10 minutes, and clarified at 15,000
g.