Retinas from experimental eyes with detachments and control eyes without detachments were dissected from the RPE–choroid, homogenized, and lysed in buffer containing 10 mM HEPES (pH 7.6), 0.5% IgEPal, 42 mM KCl, 1 mM phenylmethylsulfonyl fluoride, 1 mM EDTA, 1 mM EGTA, 1 mM dithiothreitol, 5 mM MgCl
2, and one tablet of protease inhibitors per 10 mL buffer (Complete Mini; Roche Diagnostics GmbH, Madison, WI). Retinas from at least three animals were pooled per condition at each time point examined. Assays were repeated in triplicate on independently collected samples. 661W cells were plated at 20,000 cells per well in six-well culture dishes in growth media. After 24 hours, the cells were washed one time with warmed PBS solution and then placed in growth media without fetal bovine serum. After a 24-hour incubation, the media was removed and new media without fetal bovine serum containing 500 ng/mL Fas-activating antibody was added. The cells were incubated for various lengths of time and then lysed and homogenized in lysis buffer (as above). The homogenates were incubated on ice and centrifuged at 22,000
g at 4°C for 60 minutes. The protein concentration of the supernatant was then determined (DC Protein Assay kit; Bio-Rad Laboratories, Hercules, CA). The protein samples were separated on SDS-polyacrylamide gels (Tris-HCl Ready Gels; Bio-Rad Laboratories). After electrophoretic separation, the proteins were transferred onto polyvinylidene fluoride membranes (Immobilon-P; Millipore, Billerica, MA). Protein bands were visualized with Ponceau S staining, and the lanes were assessed for equal loading by densitometry of entire lanes. Membranes were then immunoblotted with antibodies according to the manufacturer's instructions. The following antibodies were used: LC3 (Novus Biologicals, Littleton, CO), cathepsin B and cathepsin D (Santa Cruz Biotechnology, Santa Cruz, CA), receptor interacting protein kinase 1 (RIPK-1; BD Biosciences, Franklin Lakes, NJ), Atg5 (Abgent, San Diego, CA), and caspase 8 (Cell Signaling, Danvers, MA). Densitometry measurements were performed using ImageJ software (developed by Wayne Rasband, National Institutes of Health, Bethesda, MD; available at
http://rsb.info.nih.gov/ij/index.html).