Three randomly selected rats from each group were euthanized on day 3 and day 7 in the bFGF-induced CNV model and in the alkali burn model, respectively. Corneas were obtained for further analysis.
Total RNA was extracted with a mini kit (RNeasy; Qiagen, Valencia, CA), and cDNA was generated using a reverse transcription kit (Omniscript RT; Qiagen). MMP2, MMP9, VEGF, and IL-1β mRNA expression was quantified with SYBR Green (ABsolute SYBR Green ROX mix; Thermo Scientific, Waltham, MA). The samples were run in triplicate, and the relative expression of MMP2, MMP9, VEGF, and IL-1β was determined by normalizing the expression of each target to β-actin using the 2-ΔΔCt method. Primer sequences were as follows: β-actin, 5′-GAAATCGTGCGTGACATTAAAGAG-3′ and 5′-GCGGCAGTGGCCATCTC-3′; MMP-2, 5′-GCCACTAACGGAGATGCAGAT-3′ and 5′-TCTTTCTCACCACCAACTGATG-3′; MMP-9, 5′-CGTGCTCCTCTTCCTCATCTCT-3′ and 5′-CCCTGAGGACTCCTTATTTCCA-3′; VEGF, 5′-TGTGCGGGCTGCTGCAATGAT-3′ and 5′- TGTGCTGGCTTTGGTGAGGTTTGA-3′; IL-1β, 5′-GGAGAGTGTGGATCCCAAACAA-3′ and 5′-AAACTCCACTTTGGTCTTGACTTCT-3′.