Total RNA was isolated from cultured C166 cells or human RPE-choroid organ cultures using a commercial kit (RNeasy; Qiagen, Valencia, CA) according to the manufacturer's instructions and reverse transcribed into cDNA as described previously.
23 Quantification of specific mRNA species was performed by a real-time PCR reagent kit (SYBR Green RT-PCR Reagent Kit and ABI Prism 7700 Sequence Detection System; Applied Biosystems, Carlsbad, CA). Triplicate reactions were performed for each sample. Seven mouse genes and one human proinflammatory gene (
Icam1,
Icam2,
Pecam1,
Cdh5,
Nfκb1, Nfkbia, and
Nfkbib for mouse and
ICAM-1 for human) were investigated. To select a stably expressing reference gene in mouse C166 cells for normalization, algorithm software (geNorm; PrimerDesign Ltd., Southampton, UK;
http://medgen.ugent.be/genorm/) was used to evaluate the expression stability of six common reference genes (
Gapdh, β
-actin,
Hprt1,
Ywhaz,
Rpl19, and
Ppia), and expression validation was examined in two stable genes selected from the algorithm software (geNorm; PrimerDesign Ltd.). The most stable gene was chosen from two genes as the experimental reference gene. For human samples,
ICAM-2, a homolog of ICAM-1 that is constitutively expressed
27 and localized to the choriocapillaris,
28 was selected as a reference gene for normalization. qPCR data were analyzed with data analysis software (DataAssist, version 2.0; Applied Biosystems, Carlsbad, CA). Primer sequences of target genes and references were as follows: for mouse cells—Icam-1 forward, ATTCGTTTCCGGAGAGTGTG; Icam-1 reverse, CTTTGGGATGGTAGCTGGAA; Icam-2 forward, TACCAGCCTCCAGCTCAAGT; Icam-2 reverse, ACCATTTGGTTGTCCTGCAT; Pecam-1 forward, TCAACATAA CAGAGCTGTTTCC; Pecam-1 reverse, TTCTGATACTGCGACAAGACC; Cdh5 forward, GGGAAAGATCAAGTCCAACG; Cdh5 reverse, TCACACGGATGACAGAGGTC; Nfκb1 forward, 5′-AGAGCTCCGAGACGCTATCC-3′; Nfκb1 reverse, 5′-CAGTCTCTCCACCAGCTTCC-3′; Nfkbia forward, 5′-AGACTCG TTCCTGCACTTGG-3′; Nfkbia reverse, 5′-GCTTTCAGAAGTGCCTC AGC-3′; Nfkbib forward, 5′-CCTGCACTTGGCTGTGATT-3′; Nfkbib reverse, 5′-ACCGGCTGCATACAACTTCT-3′; Gapdh forward, 5′-AAGGGCTCATGACCACAGTC-3′; Gapdh reverse, 5′-GGTCCTCAGTGTAGCCCAAG-3′; Rpl19 forward, 5′-ATGCCAACTCCCGTCAGC-3′; Rpl19 reverse, 5′-ACCCTTCCTCTTCCCTATGC-3′. Primer sequences of the other four reference genes have been described elsewhere.
29