For PCR and biochemical analysis, retinas were gently separated from freshly enucleated eyes under a dissecting microscope and immediately frozen in liquid nitrogen. Tissue samples were stored at −80°C until further use. Total RNA was extracted from pairs of frozen retinas using reagent (TRIzol; Sigma) according to the manufacturer's instructions and then were treated with DNAse (Turbo DNA-free; Ambion, Austin, TX). Reverse transcription–polymerase chain reaction was performed using a first-strand synthesis kit (Reverse-iT; ABgene, Epsom, UK). Anchored oligo dT primers were used to prepare cDNA from 1 μg RNA. Quantitative PCR was performed to measure mRNA levels of genes involved in iron metabolism and of antioxidant enzymes. Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) served as the endogenous control. Two sets of reactions were performed. In the first set, all reactions were carried out in duplicate at a total volume of 15 μL. Wells contained 40 ng cDNA template, 0.75 μL TaqMan Gene Expression assay (ceruloplasmin, Mm00432654_m1; transferrin, Mm01230431_m1; TFR1, Mm00441941_m1), 7.5 μL TaqMan Universal PCR Master Mix (Applied Biosystems, Foster City, CA]) and were completed with double-distilled water. An additional set of reactions was performed in triplicate at a total volume of 10 μL. Wells contained 30 ng cDNA template, 0.5 μL gene expression assay (TaqMan [hemojuvelin (HFE2), Mm01265683_m1; HFE, Mm00439314_m1; HAMP, Mm00519025_m1; hephaestin, Mm00515970_m1; TFR2, Mm00443703_m1; GAPDH, Mm99999915_g1]), and 5 μL universal master mix (TaqMan; Applied Biosystems) and were completed with double-distilled water. When using SYBR Green, each well contained amounts of cDNA and concentrations of primers determined as optimal by calibration for each gene (heme oxygenase 1 (
Hmox1), 40 ng cDNA, 500 nM: forward CACGCATATACCCGCTACCT, reverse AAGGCGGTCTTAGCCTCTTC; GAPDH 0.5 ng, 500 nM: forward GTATGACTCCACTCACGGCAAA, reverse GGTCTCGCTCCTGGAAGATG; glutathione peroxidase 1 (
GPX1) 15 ng, 700 nM: forward ACAGTCCACCGTGTATGCCTTC, reverse CTCTTCATTCTTGCCATTCTCCTG; superoxide dismutase 1 (
SOD1) 5 ng, 700 nM: forward ATGGGGACAATACACAAGGCTG, reverse CAATGATGGAATGCTCTCCTGAG
23 ), 7.5 μL SYBR Green quantitative PCR (qPCR) mix (DyNAmo HS; Finnzymes, Espoo, Finland), and double-distilled water. Amplification was measured throughout 40 cycles of 60°C for 15 seconds, followed by 95°C for 15 seconds. Fluorescent signals were measured with a PCR system (7900HT Fast Real-Time; Applied Biosystems) and analyzed with appropriate software (SDS 2.3 and RQ Manager 1.2; Applied Biosystems). Expression levels were compared according to relative quantification (2
−ΔΔCt) values.