For the further quantitative analysis of mRNA expressions in RPE-choroid fractions of mouse eyes, real-time RT-PCR analyses were performed. The expressions of CXCR3 and its three main ligands (IP-10, MIG, and I-TAC) were quantified in laser-induced CNV model of wild-type mice, and several cytokines and molecules relevant to CNV,
6,24–26 vascular endothelial growth factor (VEGF), pigment epithelium-derived factor (PEDF), C-C chemokine ligand-2 (CCL2), and complement component-3 (C3) were quantified in laser-induced CNV model to compare these expressions in wild-type mice with CXCR3-deficient mice. For the real-time RT-PCR, 10 applications of photocoagulation were delivered to each eye of wild-type or CXCR3-deficient mouse. Three days after laser-treatment, when the expression of these cytokines and molecules reaches its peak (Ref. 27 and Takahashi H, unpublished data, 2010), mice were sacrificed by cervical dislocation, and eyes were harvested immediately. RPE-choroid fractions were isolated from the controls and the CNV eyes and were stored at −80°C until use. RNA from the RPE-choroid fractions was isolated using an SV Total RNA Isolation Kit (Promega, Madison, WI) in accordance with the manufacturer's instructions. The cDNA was prepared using Superscript III for RT-PCR (Invitrogen). Each PCR was carried out in a 20-μL volume using Platinum SYBR Green qPCR SuperMix UDG (Invitrogen) for 15 minutes at 95°C denature, followed by 55 cycles at 95°C for 30 seconds and 60°C for 1 minute in Roche Light Cycler. Values for each gene were normalized to expression levels of glyceraldehyde 3-phosphate dehydrogenase (GAPDH). The sequences of the primers used for RT-PCR were as follows: mouse-GAPDH, left, 5′-aactttggcattgtggaagg-3′, right, 5′-cacattgggggtaggaacac-3′; mouse-CXCR3, left, 5′-gctgtagccgatgttctgctggtg-3′, right, 5′-tgcactatgctcagatatctgtc-3′; mouse-IP10, left, 5′-cccacgtgttgagatcattg-3′, right, 5′-cactgggtaaaggggagtga-3′; mouse-MIG, left, 5′-aaaatttcatcacgcccttg-3′, right, 5′-tctccagcttggtgaggtct-3′; mouse-I-TAC, left, 5′-agtaacggctgcgacaaagt-3′, right, 5′-gcatgttccaagacagcaga-3′; mouse-VEGF, left, 5′-gtacctccaccatgccaagt-3′, right, 5′-gcattcacatctgctgtgct-3′; mouse-PEDF, left, 5′-cacccgacttcagcaagattact-3′, right, 5′-tcgaaagcagccctgtgtt-3′; mouse-CCL2, left, 5′-tctggacccattccttcttg-3′, right, 5′-caggtccctgtcatgcttct-3′; and mouse-C3, left, 5′-ccgcaggctgtggggaacag-3′, right, 5′-gctgtcagccaggtgctggg-3′. Ten samples were used for each analysis.