Because RALDH2 was the most abundant RALDH transcript in the choroid and because RALDH2 mRNA pools within the choroid changed significantly during recovery, in situ hybridization was carried out to determine the distribution of RALDH2-expressing cells within the chick choroid (
Fig. 3). For this purpose, cryosections of chick choroid were incubated with digoxigenin-labeled sense or antisense probes for a 750-bp region of the
RALDH2 gene. Hybridized probes were then detected by successive treatment with anti–DIG-AP antibodies and NBT/BCIP substrate.
RALDH2-positive cells were detected in treated eyes after 10 days of form deprivation (0 hour of recovery;
Fig. 3A), 11 hours of recovery (
Fig. 3D), and 24 hours of recovery (
Figs. 3E,
3F,
arrows). The antisense probe detected
RALDH2 transcripts in cells located between the large choroidal blood vessels (BVs) and the choroidal lacunae (L).
RALDH-positive cells were also detected immediately adjacent to the sclera (S) (
Figs. 3A,
3F,
arrows). Labeling of the choroids with the
RALDH2 sense probe produced minimal signal (
Fig. 3B).
RALDH2 mRNA was not detected in the retinas of treated eyes after 11 hours of recovery (
Fig. 3G) and was not detected in the neural retinas of control eyes or of eyes treated for 0 hour and 24 hours (data not shown). It is possible that
RALDH2 is expressed in cells of the RPE, but visualization of the NBC/BCIP reaction product is obscured by pigment within the RPE. The
RALDH2 cDNA probe used for in situ hybridization experiments detected a single ∼4.5-kb band by Northern blot analysis (
Fig. 3C) that was larger than the expected message size for
RALDH2 at 3.55 kb. The presence of only one band on the Northern blot analysis suggested that the probe was specific. Southern blot analyses indicated that our probe bound with high affinity to the
RALDH2 750 PCR product (data not shown). Although alternative splicing information is not available for chick
RALDH2, we suspect that tissue-specific pre-mRNA splicing differences or alternative splicing events associated with
RALDH2 transcription in embryonic versus post-hatch chicks may account for this discrepancy, as has been shown for the human
RALDH2 gene (Aldehyde Dehydrogenase Gene Superfamily Database;
www.aldh.org).