Albino Wistar rats bred in our own colony were used in all experiments. All proceedings concerning animal use were done in accordance with the ARVO Statement for the Use of Animals in Ophthalmic and Vision Research, and the guidelines published in the NIH
Guide for the Care and Use of Laboratory Animals (available in the public domain at
http://grants.nih.gov/grants/olaw/Guide-for-the-Care-and-Use-of-Laboratory-Animals.pdf). Plastic culture dishes (CellStar) were from Greiner Bio-One (Frickenhausen, Germany). Dulbecco's modified Eagle's medium (DMEM; Gibco) was purchased from Life Technologies (Grand Island, NY). All-trans retinoic acid (98% purity by HPLC), poly-L-ornithine, trypsin, trypsin inhibitor, transferrin, hydrocortisone, putrescine, insulin, CDP-choline, CDP-ethanolamine, gentamicin, 4,6-diamidino-2-phenylindole (DAPI), paraformaldehyde, (4-[4′-fluorophenyl]-2-[4′-methylsulfinylphenyl]-5-[4′-pyridyl] imidazole, SB203580), DHA, monoclonal anti–acetylated tubulin and anti-syntaxin (HPC-1) antibodies were from Sigma-Aldrich (St. Louis, MO). Polyclonal antibodies against
P-p38, total p38, P-Erk1-2, and
total Erk1-2 were from Cell Signaling Technologies (Beverly, MA). Monoclonal antibodies against rhodopsin (Rho4D2) and peripherin (clone p3b6) were generously supplied by Robert Molday (University of British Columbia, Vancouver, BC, Canada). Polyclonal anti-Crx antibody was a generous gift of Dr Cheryl Craft (University of Southern California, Los Angeles, CA). Polyclonal anti-Pax6 antibody was a kind gift of Dr GS Mastick (University of Michigan, Ann Arbor, MI). Cy2 and Cy3 conjugated goat anti-rabbit secondary antibodies were from Jackson ImmunoResearch (West Grove, PA).
Monoclonal antibodies anti–actin, nestin, p27kip1, and secondary antibodies used for Western Blot analysis, goat anti–mouse IgG-horseradish peroxidase (HRP), and goat anti–rabbit IgG-HRP, were from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Tyramide Signal Amplification kit (TSA) was from DuPont NEN (Wilmington, Denmark). Monoclonal antibody against BrdU (clone G3G4) was from DSHB (developed under the auspices of the NICHD and maintained by the University of Iowa, Department of Biological Sciences, Iowa City, IA). MitoTracker Red CMXRos and terminal deoxynucleotidyl transferase, recombinant 5-bromo-2-deoxyuridine-5-triphosphate (BrdUTP), and terminal deoxy-nucleotidyl transferase (TdT) buffer were from Molecular Probes (Eugene, OR). Cell-permeant pan caspase inhibitor, carbobenzoxy-valyl-alanyl-aspartyl-(O-methyl)-fluoromethylketone (Z-VAD-FMK) was from Promega (Madison, WI). Polyvinylidene difluoride (PVDF) membranes were Immobilon P (Millipore, Billerica, MA). Solvents were HPLC grade, and all other reagents were analytical grade.