Corneas were removed on days 1, 2, 3, 5, and 7 (n = 6) following ablation and were radially sectioned into equal halves. The epithelium from one half was scraped from the stroma and flash frozen in nitrogen. The other half was fixed in 10% PBS buffered formalin and then embedded in paraffin. Sections (7 μm) were stained with hematoxylin-eosin (H-E) and Masson's trichrome (MT). In addition, immunohistochemistry (IHC) was performed on 7-μm-thick tissue slides. Briefly, sections were deparaffinized and, after washing, cells were blocked with PBS/5% goat serum (Millipore, Billerica, MA). Slides were then incubated overnight with the following primary antibodies: rabbit anti-TrkA (1:1000 in PBS/5% goat serum; Santa Cruz Biotechnology, Inc., Santa Cruz, CA) and rabbit anti-MMP-9 (1:1000 in PBS/5% goat serum; Abcam, Cambridge, UK). Biotinylated goat antirabbit IgG (1:200 PBS/5% goat serum; Dako, Carpinteria, CA) was applied for 1 hour and, after washing, slides were incubated for 30 minutes with horseradish peroxidase (HRP)-conjugated streptavidin (Dako). Finally, samples were incubated for 3 minutes with 0.01% diamine benzidine tetrahydrochloride (DAB Substrate Kit for Peroxidase; Vector, Burlingame, CA). To avoid false-positive results, a series of tissue sections were stained, omitting the primary antibody. Also, irrelevant antibodies of the same isotype were compared to ensure specificity.