Adult wild-type and ephrin-A5−/− eyes were enucleated and fixed in 4% formaldehyde for 10 minutes at room temperature, followed by a rinse in PBS for 5 minutes, and stored in 10% sucrose overnight at 4°C. Embryonic tissue was fixed in 4% paraformaldehyde for 60 minutes at room temperature, followed by three rinses in PBS for 10 minutes each, and stored in 30% sucrose overnight at 4°C. All tissues subsequently were frozen and cryosectioned at 10 μm.
Primary vitreous structures were observed using various antibodies. Neural crest cells were identified using anti-AP2β antibody (1:200, Cat. #2509; Cell Signaling Technology, Inc., Danvers, MA). Mesenchymal and endothelial cells were determined using antibodies against CD-31 (1:200, Cat. #550244; BD Biosciences, San Jose, CA) and the vascular basal membrane marker collagen-IV (1:200, Cat. #2150-1470; AbD Serotec, Kidlington, UK), respectively. Perivascular smooth muscle cells were identified using an antibody against α-smooth muscle actin (1:200, Cat. #A 2547; Sigma-Aldrich). Pericytes were identified using an antibody against platelet-derived growth factor-β (PDGFRβ; 1:200, Cat. #14-1402; eBioscience, Inc., San Diego, CA). Macrophages were identified using antibodies against F4/80 (1:200, Cat. #MF48000; Invitrogen, Carlsbad, CA) and ED-1 (1:200, Cat. #Ab31630; Abcam, Cambridge, UK). Pigmented cells were stained using an antibody against tyrosinase related protein (TRP)-1 (1:200, Cat. #sc-10448; Santa Cruz Biotechnology, Inc., Santa Cruz, CA). EphA2 receptor localization was determined using antibodies against EphA2 (1:200, Cat. #AF639; R&D Systems, Minneapolis, MN). Primary antibodies were incubated overnight at 4°C and washed in PBS, followed by detection using goat or donkey secondary antibodies conjugated with Alexa Fluor 488 (Invitrogen) or CY3 (Jackson ImmunoResearch Laboratories, Inc., West Grove, PA) at room temperature for 2 hours. Nuclei were stained using TO-PRO-3 iodide far red fluorescence dye (1:1000, Cat. #T3605; Invitrogen).
To determine Eph receptor localization using ephrin-A5-Fc, adult eyes were enucleated, fixed, and sectioned as described earlier. Tissue was treated with ephrin-A5-Fc fusion protein (Cat. #374-EA-200; R&D Systems) at 10 μg/mL overnight at 4°C and washed in PBS, and labeling detected using a biotin-conjugated goat anti-human antibody (1:200; Jackson ImmunoResearch Laboratories, Inc.) followed by CY3-conjugated streptavidin (1:1000; Jackson ImmunoResearch Laboratories, Inc.).
Cell division was determined through bromodeoxyuridine (BrdU) treatment and detection, and proliferating cell nuclear antigen (PCNA) labeling. Bromodeoxyuridine (Cat. #B5002; Sigma-Aldrich) was dissolved in a 0.007 Normal (N) NaOH solution made in 0.9% NaCl at 5 mg/mL and injected intraperitoneally at a concentration of 50 μg/g body weight. Eye tissue was fixed and sectioned as described previously. Sections were treated in 2 N HCl at 37°C for 30 minutes, followed by a rinse in 0.1 M sodium borate, pH 8.5, at room temperature for 10 minutes. The BrdU incorporation was detected using an antibody against BrdU (1:100, Cat. #OBT0030G; Accurate Chemical & Scientific Corporation, Westbury, NY). Cell division also was determined using an antibody against PCNA (1:100, Cat. #sc-25280; Santa Cruz Biotechnology, Inc.). Before staining, slides were boiled in 0.1 M citrate buffer for 10 minutes and cooled at room temperature in the same buffer for 20 minutes. Slides then were immersed in 3% hydrogen peroxide solution in PBS for 10 minutes. Apoptosis was determined using an antibody against cleaved caspase-3 (1:200, #9661; Cell Signaling Technology, Inc.).