Abstract
Purpose.:
Normal-tension glaucoma (NTG) is a disease of late onset, complex trait with multiple risk factors. In this study, we discovered a mitochondrial DNA variant in NTG patients using next-generation sequencing (NGS).
Methods.:
The DNA was extracted from the peripheral blood of NTG patients and normal control subjects. Sequencing of the entire mitochondrial DNA (mtDNA) using NGS revealed new genetic risk variants for NTG patients (discovery sample, n = 20). For the candidate genetic variants, we performed a disease–gene association study in the independent case–control populations (validation sample; NTG, n = 196 and normal control, n = 202) using Sanger sequencing.
Results.:
This study identified 148 different novel mtDNA-sequence changes. Of these, 21 sequence variants identified at a frequency greater than 15% were located in the ND2-ND6, RNR1, RNR2, COX1, COX3, ATP6, ATP8, and CYTB genes. Of the 21 candidate genetic variants, the frequencies of m.4883C>T (ND2 gene), m.9540T>C (COX3 gene), and m.14766C>T (CYTB gene) were significantly different between NTG patients and controls (28.4% vs. 15.3%, P = 0.002; 56.5% vs. 44.4%, P = 0.020; and 3.1% vs. 0.0%, P = 0.030, respectively). The association with m.4883C>T in the ND2 gene resisted the Bonferroni correction for multiple tests. The NTG patients of T genotype in the m.4883C>T variant have more advanced visual field loss than those who carry the C genotype (P = 0.009).
Conclusions.:
This study reveals a spectrum of mtDNA variants in patients with NTG. Our results identified a synonymous change, m.4883C>T variant, which was more prevalent in the NTG cohorts than in the controls. This finding suggests that the identified variant may be a genetic risk factor for the development of NTG.
We included 20 NTG patients (discovery sample) in this study. Cases diagnosed as pseudoexfoliation glaucoma and those with a known myocilin mutation were excluded. The entire mitochondrial DNA (mtDNA) was sequenced using NGS for the 20 NTG patients. From these results, we revealed new genetic risk variants for NTG patients. For the candidate genetic variants, we performed a disease–gene association study, using Sanger sequencing, in the independent case–control populations (validation sample). The validation sample consisted of 196 NTG patients and 202 normal control subjects.
The diagnostic criteria for NTG were normal IOP, glaucomatous optic disc cupping, glaucomatous visual field defects, open anterior chamber angle, and the absence of any contributing ocular or systemic disorders. The IOP was measured using a Goldmann applanation tonometer. Normal IOP was defined as a diurnal IOP persistently below 21 mm Hg without medication. Visual fields of NTG patients were evaluated using the 30-2 program of the Humphrey Visual Field Analyzer Model 750 (Zeiss, Inc., San Leandro, CA) or Model 630 (Allergan, Inc., San Leandro, CA). Reliable fields were those with a fixation loss rate of ≤20%, and false-positive and false-negative error rates of ≤20%. A glaucomatous visual field defect was defined as a Glaucoma Hemifield Test outside normal limits on at least two fields, or a cluster of three or more nonedge points in a location typical for glaucoma, all of which are depressed on the pattern deviation plot at a P < 5% level and one of which is depressed at a P < 1% level on two consecutive fields, or a pattern standard deviation that occurs in less than 5% of normal fields. Exclusion criteria included historical or neuroimaging evidence of another possible optic neuropathic condition affecting either eye, significant visual loss in both eyes not associated with glaucoma, or refusal to participate.
Normal control subjects who had completed medical and ophthalmologic examinations at the Health Promotion Clinic served as controls. These subjects had best corrected visual acuities of 20/25 and IOPs of 21 mm Hg or less. Subjects with any suspicious findings of glaucoma in the disc and fundus (e.g., cup-to-disc ratio of more than 0.6, notch in the neural rim, vertically oval cup, zone beta peripapillary atrophy, retinal nerve fiber layer defect, choroidal sclerosis, or abnormalities of the disc vessels) were not included.
DNA Extraction and Long-Range PCR.
Library Preparation, Emulsion PCR, and Sequencing Reaction.
Bioinformatics Analysis.
Supported by the Korea Health Technology R&D Project, Ministry of Health & Welfare, Republic of Korea (Grants A101310 and A121615).
Disclosure: J.W. Jeoung, None; M.-W. Seong, None; S.S. Park, None; D.M. Kim, None; S.H. Kim, None; K.H. Park, None