Total cytoplasmic RNA was extracted from homogenized conjunctiva or
pterygium tissue by guanidinium–phenol–chloroform
technique
24 with Trizol kit (Gibco–BRL, Grand Island,
NY). Three micrograms of total RNA was converted into first-strand cDNA
by a random priming technique
25 in 20 μl of RT mixture:
8 μl RNA, 2 μl random hexamers (150 ng/μl), 10 μl RT buffer (40
mM/l Tris–HCl, 100 μM/l each dNTP, 6 U Rnasin, 50 nM/l
dithiothreitol, 5 ng/ml bovine serum albumin, 8 mM/l
MgCl
2). After RNA denaturation for 10 minutes at
70°C and then cooling on ice, 1 μl of Avian Myeloblastosis Virus
reverse transcriptase was added, and the samples were incubated for 60
minutes at 37°C. All reagents were purchased from Promega (Madison,
WI). Changes in the amount of ST3Gal III mRNAs were monitored by
coamplification in the same tube of the target fragment and of a
glyceraldehyde-3-phosphate dehydrogenase (GAPDH) housekeeping gene
sequence as an internal standard. For reliable quantification, the
concentration of each set of primers and the stringency of PCR
conditions were adjusted so that the amplicons would have similar
amplification kinetics and their exponential phases of amplification
would overlap as previously described.
26 Amplification was
done with specific primer target sequences as follows
27 :
for ST3Gal III, 5′-CGGATGGCTTCTGGAAATCTGT-3′ and
3′-AGTTTCTCAGGACCTGCGTGTT-5′ and for GAPDH, 5′-ACCACAGTCCATGCCATCAC-3′
and 3′-TCCACCACCCTGTTGCTGTA-5′. The PCR reaction was set up in
a25-μl mixture consisting of 5 μl cDNA solution diluted in
2.5 μl PCR buffer (1 mM/l Tris–HCl, pH 8.3, 1 mM/l KCl, 1 mM/l each
dNTP, and 15 mM/l MgCl
2), 2 μl ST3Gal III
primers, 0.2 μl
Taq polymerase (Biotaq; Bioprobe,
Montrevil, France), and an adjusted volume of distilled water. After 10
minutes of denaturation at 95°C, 36 cycles of amplification were
carried out on a PHC3 thermocycler (Techne, Cambridge, UK) followed by
a final 10-minute extension at 72°C. The cycling parameters were the
following: denaturation at 94°C for 1 minute, annealing at 63°C for
1 minute, and extension at 72°C for 2 minutes.