Single-strand cDNA was obtained by reverse transcription (RT) of
retina or lens RNA using approximately 1-μg RNA samples, incubated in
20-μl reactions with 1.25 U AMV reverse transcriptase (GIBCO–BRL,
Paisley, UK) and random hexamer primers (Pharmacia Biotech, Uppsala,
Sweden) for 60 to 90 minutes at 42°C, followed by heat inactivation
of the enzyme. PCR amplifications were performed using primers
according to the strategy of Goring et al.
7 For detection
of γE/F-crystallin expression, primers GECRY.1:
5′-AGCCATGGGGAAGATCACCTTCTATG-3′ and GCRYR:
5′-AAGCGGTCCTGCAGGTGGGAGCAG-3′ were used, in 30-μl reactions
incorporating 0.75 U
Taq polymerase (GIBCO–BRL) and 2 μl
cDNA in a thermal cycler (Hybaid, Teddington, UK) with the following
parameters: 94°C for 3 minutes, then 35 cycles of 94°C for 45
seconds, 55°C for 45 seconds, 72°C for 30 seconds, and a final step
of 72°C for 5 minutes. Aliquots of 10 μl were cut with
BglII (New England Biolabs, Beverly, MA) for a minimum of 2
hours and the products resolved on ethidium bromide–stained 1.0%
agarose (Pharmacia Biotech, Uppsala, Sweden)/3.0% NuSieve GTG (FMC;
Flowgen, Lichfield, UK) gels. For the detection of γA-, γB-, γC-,
and γD-crystallins, primers were as described by Goring et
al.,
7 and amplification conditions were as above with the
exception that the anneal temperature was reduced to 50°C. Molecular
size markers were obtained from GIBCO–BRL. Verification of the
amplified products was performed by probing of a Southern blot of theγ
E/F-crystallin reaction products with labeled insert of the
sequenced γE-crystallin clone, which confirmed cross-hybridization,
and by
HinfI restriction digestion of theγ
A-γD-crystallin multiplex reaction products, which led to the
expected reduction in size of all 4 bands and generation of a single
additional small fragment, due to cleavage at a conserved site (data
not shown). The primer pairs in all cases were set across an intron,
but additional amplifications in the absence of reverse transcriptase
were performed to confirm that the resultant products were not due to
genomic DNA contamination.