RPE cells were treated with vehicle or VEGF (10 ng/ml) for 8
hours. The cells were washed twice with ice-cold phosphate-buffered
saline, scraped off the dish in ice-cold SSC (150 mM sodium chloride
and 15 mM sodium citrate) and collected in a 15-ml tube by
centrifugation at 500g for 5 minutes at 4°C. Subsequent
steps were performed at 4°C. The cells were resuspended in 4 ml lysis
buffer (10 mM Tris-HCl [pH 7.4], 10 mM NaCl, 3 mM
MgCl2, and 0.5% Nonidet P-40) and then were
disrupted with homogenizers (10 strokes; Dounce; Kontes Glass,
Vineland, NJ). Nuclei were pelleted by centrifugation at
500g for 5 minutes, resuspended in 100 μl of glycerol
storage buffer (10 mM Tris-HCl, [pH 8.3], 40% [vol/vol] glycerol,
5 mM MgCl2, and 0.1 mM EDTA), and frozen in
liquid N2. The nuclear suspension was mixed with
0.1 ml 2× reaction buffer (100 mM HEPES [pH 8.0]; 10 mM
MgCl2; 300 mM KCl; 200 U/ml RNasin [Roche
Molecular Biochemicals, Indianapolis, IN]; 1 mM each ATP, GTP, and
CTP; and 150 μCi (1 μCi = 37 kBq)[ 32P]UTP [3000 Ci/mmol; Amersham Pharmacia
Biotech]) and incubated for 30 minutes at 30°C. Transcription was
stopped by adding 20 μg DNase I, followed by 80 μg proteinase K.
The 32P-labeled RNA was purified by extraction
with phenol-chloroform and two sequential precipitations with ammonium
acetate. Equal amounts of 32P-labeled RNA were
hybridized in 50% formamide, 5× SSC, 5× Denhardt’s solution, 1%
SDS (1× SSC, pH 7.0) at 42°C for 72 hours. Filters contained 0.1 to
5 μg each of linearized plasmids immobilized on membranes (Zeta-Probe
GT; Bio-Rad Laboratories, Hercules, CA) after blotting in 12× SSPE
with a microfiltration apparatus (Bio-Dot SF; Bio-Rad). Filters were
washed three times with 2× SSC and 0.1% SDS at
42oC for 5 minutes, followed by two washes with
0.2× SSC and 0.1% SDS at 65°C for 15 minutes, and then analyzed as
for Northern blot analysis (PhosphoImager; Molecular Dynamics).