ISH was carried out as described previously.
16 Briefly,
6-μm sagittal sections of monkey ONH and transected optic nerves were
deparaffinized and washed in ethanol. Slides were then incubated for 15
minutes in PBS containing 0.3% Triton X-100, followed by 5 μg/ml
proteinase K (Roche) treatment in PBS for 30 minutes at 37°C. Slides
were fixed in 4% paraformaldehyde, followed by a 0.2% glycine/PBS
wash. Slides were then immersed in freshly prepared 0.5% acetic
anhydride in 0.1 M triethanolamine buffer, pH 8.0, for 10 minutes at
room temperature in a slow shaker. Slides were dehydrated in ethanol
and baked for 30 minutes before addition of probes. Hybridization was
performed in a buffer containing 50% deionized formamide, 2× SSC, 20
mM Tris-HCl, pH 8, 1× Denhardt’s, 1 mM EDTA, 10% dextran sulfate,
0.5 mg/ml yeast tRNA, and 10 mM DTT. Fifty microliters of hybridization
mixture containing 100 ng of labeled probe was applied to each section
and let to hybridize overnight at 42°C. Slides were washed in 2× SSC
twice for 15 minutes each at 37°C, followed by another wash in RNase
buffer (0.5 M NaCl, 10 mM Tris-HCl, pH 8, 1 mM EDTA) for 15 minutes at
37°C. Slides were treated with 20 μg/ml RNase A (Roche) for 30
minutes at 37°C, followed by washes in 2×, 1×, 0.5×, and 0.1×
SSC, 15 minutes each at 45°C. Slides were rinsed with Tris buffer
(0.1 M Tris-HCl, pH 7.5, 0.15 M NaCl) and blocked with 2% calf serum
in the same buffer for 30 minutes at room temperature. Slides were then
reacted with an alkaline phosphatase–conjugated antibody against
digoxigenin (Roche) for 1 hour at 37°C. After washes in Tris buffer,
slides were rinsed in development buffer (0.1 M Tris, pH 9.5, 0.1 M
NaCl, 50 mM MgCl
2, 0.1% Tween 20, 5 mM levamisole)
followed by color development with NBT/BCIP solution (Roche) for 3
hours at room temperature. Slides were rinsed in distilled water and
mounted with AquaMount (Fisher Scientific, Piscataway, NJ) without
additional counterstaining.