A mouse BAC clone (control number 24885, clone address
164[K13]) containing the Optc gene was obtained after
library screening by Incyte Genomics (St. Louis, MO) using the
following mouse opticin primers: OP17, 5′-CTG GAT TCC ATC CCT GGG
CCT-3′, and OP29, 5′-ACA GGG AGC CGT GGC AGG CA-3′. To analyze the
genomic structure of mouse Optc, primers designed from the
cDNA sequence were used for intronic bridging PCR reactions. PCR
products were subcloned into a vector (pGEM-T Easy; Promega) and
sequenced on an automated sequencer (model 377; Perkin Elmer-Applied
Biosystems, Inc., Foster City, CA) using vector primers. A mouse BAC
clone that contains the Fmod, Prelp, and Optc genes is present in GenBank (AC026760), but the
annotation is presently not complete. Similarly, human BAC clones
containing the PRELP and OPTC genes (AC022000,
AL391817) were identified together with a third human BAC clone that
contains FMOD and PRELP (AL359837). The human BAC
clones were further annotated by using cDNA sequences of PRELP and
opticin, and the remaining gaps were filled in by performing bridging
PCR reactions on BAC DNAs. In addition, PCR reactions were performed to
determine the distance between the mouse Prelp and Optc genes by using AC026760 with the following primers:
PR1, 5′-CGT CCC TTC GTG AGG ATG GT-3′, and OP14, 5′-GGG GAC AGC TAG ACA
CCC CCA-3′. The PCR product was ligated to the vector (pGEM-T Easy;
Promega) and sequenced.