After dissection of rat lenses, the lens capsule and epithelial
cells were removed immediately and transferred into a tube (Eppendorf)
containing 300 μl extraction buffer (50 mM Tris-HCl [pH 7.0]; 0.1%β
-mercaptoethanol; 0.1 mM EDTA, 0.1 mM EGTA, 2 mM leupeptin, 1 mM
phenylmethylsulfonyl fluoride [PMSF], 1 mM benzamidine-HCl, 2 mM
dithiothreitol [DTT], 0.5% Triton X-100). The epithelia were
homogenized on ice with the tube micropestle (Eppendorf; Brinkman
Instruments, Inc.). The remaining fiber mass was immediately
transferred into a 10-ml beaker containing 1 ml protein extraction
buffer with constant stirring, using a 5-mm magnetic stirring bar at
4°C. During the extraction, we found that the lens fiber cells were
more easily dissolved in protein extraction buffer than in the RNA
extraction buffer; thus, the stirring time used to collect the similar
layers of fiber cells was shorter. After 10 minutes, the dissolved
fiber cell solution was collected and homogenized for 20 strokes with
the glass homogenizer (Kimax; Fisher Scientific). The remaining part of
the lens was transferred to a new beaker containing 1 ml extraction
buffer, and the next layers of fiber cells were dissolved by another
10-minute stirring. This process was repeated another two times. The
first collection of the dissolved fiber cells was again designated F1
(the cortical layers of secondary fibers) and the fourth collection, F4
(the inner layers of secondary fibers). After four collections, the
final part of the lens (the lens nucleus mainly consisting of primary
fibers) was dissolved by homogenization and labeled N. The homogenates
of both epithelial and fiber cells were centrifuged at 14,000 rpm for
20 minutes at 4°C. The supernatant of each sample was collected in
aliquots and frozen with liquid nitrogen and then stored at −80°C.
The same procedure was used for protein extraction from bovine lenses,
except that 2 ml of extraction buffer was used and the stirring time
was 20 minutes for each fraction.