To evaluate the inhibitory effect of PDTC on ocular tissues,
total RNA was extracted by the acid guanidium
thiocyanate-phenol-chloroform method.
25 ICBs were
dissected, homogenized, and centrifuged to remove cellular debris. The
RNA pellet obtained from four eyes was resuspended in nuclease-free
water and processed together as a group. Detection and quantification
of rat cytokine mRNAs were accomplished with a multiprobe RPA system
(BD PharMingen; San Diego, CA) as recommended by the supplier. Briefly,
a mixture of [
32P]UTP-labeled antisense
riboprobes was generated from a template set (rCK-1 Multi-Probe
Template Set; BD PharMingen). This set contains anti-sense RNA probes
that can hybridize with target rat mRNAs encoding IL-1α, -1β, -2
-3, -4, -5, -6, and -10 and TNF-β, TNF-α, and IFN-γ. In addition,
two housekeeping gene products, L32 and glyceraldehide-3-phosphate
dehydrogenase (GAPDH), were present. Four micrograms total RNA was used
in each sample. Total RNA was hybridized overnight at 56°C with 300
pg of the
32P anti-sense riboprobe mixture.
Nuclease-protected RNA fragments were purified by ethanol
precipitation. After purification, the samples were resolved on 5%
polyacrylamide sequencing gels. The gels were dried and subjected to
autoradiography. Protected bands were observed after exposure of gels
to x-ray film. Specific bands were identified by their individual
migration pattern in comparison with the undigested probe, and the
bands were analyzed on a bioimage analyzer (BAS-1500; Fuji, Tokyo,
Japan).