To optimize the resolution of HMW proteins in 2-D DIGE gel images, we selected the HMW (>34 kDa) region and elevated the PMT voltage for a subsequent scan (
Supplementary Fig. S1). Consequently, the overall intensity of spots in this region was significantly higher (
Figs. 3A,
3C). Based on this optimization, a total of 34 spots, as indicated (
Fig. 3C), showed significantly different (average ratio ≥ 1.2;
P < 0.05) protein levels in the four groups. Among these spots, 25 were successfully identified (
Table 2). Notably, glutathione synthetase (GS; spot 27) and lengsin (a lens-specific member of the GS superfamily; spot 31) expression was significantly lower in type 1 but not type 2 DC lenses compared with normal controls. Additionally, three glycolic enzymes were significantly differentially expressed among the four groups. Expression of phosphoglycerate kinase 1 (PGK1; spot 20), which catalyzes the seventh step of glycolysis for ATP production, was lower (1.27-fold) in type 1 DC lenses but higher (1.27-fold) in type 2 DC lenses compared with normal controls. Expression of α-enolase (spot 19), which catalyzes the ninth glycolytic step, was higher (1.22-fold) in type 2 DC lenses compared with normal controls but similar between controls and type 1 DC lenses. Expression of glyceraldehyde-3-phosphate dehydrogenase (GAPDH; spots 5 and 6), which catalyzes the sixth glycolytic step, was increased in HFD-fed rats compared with normal controls. Moreover, expression of the key enzyme in the sorbitol pathway, AR (spot 4), was increased by 1.59- and 1.27-fold in type 1 and type 2 DC lenses, respectively, compared with normal controls (
Fig. 3C;
Table 2), consistent with the whole-gel analysis (
Fig. 3A;
Table 1). In contrast, compared with normal controls, expression of annexin A2 (spot 18) was decreased (1.39-fold) in type 2 DC lenses, and expression of annexin A5 (spot 1) was decreased (1.52-fold) in type 1 DC lenses. In
Figure 4, standardized log abundances are shown for GS, lengsin, PGK1, α-enolase, annexin A2, and annexin A5 in the four groups for every 2-D DIGE gel, which were determined using DeCyder software. Metabolic studies were then performed to further validate the importance of the observed changes in the enzymes.