Lens epithelial cells were seeded at a density of 5 × 105 cells per well of a six-well plate and incubated overnight. Cells were serum starved at 80% confluency, followed by treatment with the scFv antibodies or the respective inhibitors of individual pathways being studied: SMAD3(SIS3), ERK1(PD98059), p38(SB203580), and JNK(SP600125). Transforming growth factor-β2 (2 ng/mL) was added after 1 hour, and cells were further incubated for the time periods specified in Results. At the end of the incubation, cells were washed twice with PBS followed by cell lysis in 200 μL ice-cold RIPA buffer (25 mM Tris-HCl [pH 7.6], 150 mM NaCl, 1 mM Na3VO4, 1% Nonidet [N]P-40, 1% sodium deoxycholate, 0.1% SDS) along with protease inhibitor cocktail (Roche, Mannheim, Germany). Cell lysate was electrophoresed on 10% SDS-PAGE, followed by transfer to the nitrocellulose membrane. The membrane was blocked and probed with primary anti-pFAK (Y397, 1:500; Sigma-Aldrich Chemical Co.) antibody, anti-pSMAD3 (Y208; Sigma-Aldrich Chemical Co.), anti-pERK (T202/Y204; Cell Signaling, Beverly, MA, USA), pJNK (T183/Y185; Cell Signaling), or pp38 (T180/Y182; Cell Signaling) and secondary anti-rabbit-HRP conjugate (1:10,000). The membrane was developed using ECL. The same membrane was stripped again and probed with the corresponding antibodies for visualizing focal adhesion kinase (FAK), SMAD, p38, JNK, and ERK proteins, followed by probing with secondary HRP-conjugated anti-rabbit antibody or anti-mouse antibody (1:10,000). The membrane was developed using the ECL kit. Membrane was also probed with anti-beta-actin antibody as a loading control.
In addition to Western blotting, nuclear phosphorylation of SMAD3 was also examined by immunostaining using the confocal microscope (Olympus).