The presence of
exoU and
exoS genes was determined using multiplex PCR on all clinical
P. aeruginosa strains. Using primer pairs reported by Ajayi et al.,
12 the following gene fragments were amplified:
exoU (134 bp) and
exoS (118 bp). Bacteria were grown overnight at 37°C in TSB, and DNA was isolated by using a DNA purification kit according to the manufacturer's protocol (Viogene, Sunnyvale, CA, USA). The PCR was set up as follows: 1 μL DNA template (500 ng), 1 μL total PCR primers (MDBio, Inc., Taipei, Taiwan, Republic of China) (a final 40 mM concentration of each primer), 12.5 μL 2× GoTaq Green Master Mix (Promega Corporation, Sunnyvale, CA, USA), and 10.5 μL sterile water. The negative control contained GoTaq Green Master Mix, no DNA, and 11.5 μL sterile water. The positive controls for the
exoU and
exoS genes were from the standard strains 6206 and 6294, respectively.
8,13 The standard reaction included 1 μL each of bacterial DNA, GoTaq Green Master Mix, and 10.5 μL sterile water. Polymerase chain reaction amplification was carried out as follows: initial denaturation at 94°C for 10 minutes; 35 cycles of 94°C for 45 seconds, 55°C for 45 seconds, and 72°C for 45 seconds; and a final extension step at 72°C for 7 minutes. The reaction was run in a 3% agarose gel (Sea Kem LE agarose; BMA, Rockland, MD, USA) with 1:10000 SYBR Safe DNA Gel Stain (Invitrogen, Carlsbad, CA, USA). Strains that were
exoU+/
exoS− were considered cytotoxic.
ExoS+/
exoU− strains were classified as invasive. Atypical strains that were either positive or negative for both genes were excluded from this study.