After AION, we performed serial confocal scanning laser ophthalmoscopy (cSLO) imaging of Thy1-YFP-H mice at 488 nm using Spectralis HRA+OCT (Heidelberg Engineering, GmbH, Heidelberg, Germany). The focus of the lens was adjusted for every eye to capture the most robust fluorescence signal in the RGC axons in the inner retina. On average, 100 images at high-resolution mode were averaged per picture. There was preservation of YFP signal over several days after AION to easily track axonal integrity in vivo. Histologic studies were carried out on the last time point of cSLO imaging (days 3–5). The animals were killed through transcardiac perfusion of 4% paraformaldehyde in PBS, and we prepared whole mount retinae, which were immunostained with anti-GFP rabbit polyclonal antibody (1:500–1000 dilutions; Sigma-Aldrich, St. Louis, MO, USA) and secondary goat anti-rabbit-IgG A488-labeled antibody (1:200–400 dilutions, Invitrogen/Life Technologies, Grand Island, NY, USA) and mounted in DAPI-containing medium (Vectashield, Vector Laboratories, Burlingame, CA, USA). Fluorescence microscopy was done using an inverted Nikon Eclipse TE300 microscope (Nikon Corporation, Tokyo, Japan) with 4×, 10×, and 20× objectives, and images were captured using Metamorph software (Molecular Devices, Sunnyvale, CA, USA).