The EOMs from the infant monkeys were sectioned frozen at a thickness of 30 μm using a Leica cryostat (Leica, Wetzlar, Germany), and the sections were stored at −80°C until processed. Every 30th section was stained with hematoxylin and eosin (H and E) to be used for myofiber area measurements. For visualization of neuromuscular junctions, every 40th section was washed in 0.01 M PBS, pH 7.4 containing 0.1% Triton X-100 (PBS/TX), blocked in 10% goat serum for 1 hour, and incubated overnight at 4°C with an antibody to the slow heavy myosin chain isoform (MyHC; Vector Laboratories, Burlingame, CA, USA) or to synaptophysin (1:300; Abcam, Cambridge, MA, USA). Sections were washed in PBS, followed by incubation in secondary antibody, goat anti-mouse IgG labeled with Cy3 (1:1000; Jackson ImmunoResearch Laboratories, West Grove, PA, USA) for 1 hour at room temperature. To visualize neuromuscular junctions, sections were double labeled by incubation with α-bungarotoxin conjugated to AlexaFluor488 (1:3000; Molecular Probes, Eugene, OR, USA) overnight. A subset of sections were double or triple labeled for nerves by incubation in an antibody to neurofilament (1:1000, smi-31; BioLegend, Dedham, MA, USA) overnight, and visualized with goat anti-mouse DyLight 405 or donkey anti-mouse AlexaFluor488 (1:1000; Jackson ImmunoResearch Laboratories).
Using the above procedures, human inferior oblique specimens were immunostained for TrkB (1:50 sc-8316; Santa Cruz Biotechnology), a receptor for BDNF, as the antibodies we tested did not work with the monkey tissues. Human tissue from three to four areas throughout each control muscle was immunostained for BDNF (1:100; Abcam; 1:100 sc-546; Santa Cruz Biotechnology; 1:50; Promega, Madison, WI, USA) to assay neurotrophin and receptor distribution through the EOM. Sections were visualized with the secondary antibodies goat anti rabbit Rhodamine Red or donkey anti sheep Cy3 (Jackson ImmunoResearch Laboratories). To further characterize BDNF distribution, BDNF was doubled labeled with either α-bungarotoxin conjugated to AlexaFluor488 as described above, or with a variety of myosin isoforms using the above procedure. Antibodies against myosins from the Developmental Studies Hybridoma Bank (Iowa City, IA, USA) were: type 2X MyHC (1:20), embryonic MyHC (1:40), slow MyHC (1:1000), and neonatal MyHC (1:20). Antibodies obtained from Abcam were α-cardiac MyHC (1:10) and 2a MyHC (1:100). The MyHC isoforms were visualized with labeling by the secondary antibody donkey anti mouse AlexaFluor488 (Jackson ImmunoResearch Laboratories). All sections were washed and mounted on glass slides and coverslipped with Vectashield (Vector Laboratories).