After rabbits were euthanized, whole corneas were excised and fixed with 2% fresh paraformaldehyde in 0.1 M phosphate buffer (pH 7.4) for 2 hours at room temperature. Corneas were then washed with PBS three times for 5 minutes each and incubated with mouse monoclonal anti–βIII-tubulin antibody (1:1000; Convance Antibody Services, Inc., Berkeley, CA, USA) or chicken anti-CGRP (1:500; Chemicon International, Temecula, CA, USA) in 1% goat normal serum plus 0.15% Tritron X-100 in 0.1 M PBS for 24 hours at room temperature. After washing (4 × 15 minutes), the tissues were incubated with the corresponding secondary antibodies Alexa Fluor-594 goat anti-mouse IgG or Alexa Fluor 488 donkey anti-chicken IgG (Invitrogen, Eugene, OR, USA).
The injured area was viewed and photographed with a fluorescence microscope (Nikon Eclipse TE200; Nikon, Inc., Melville, NY, USA) equipped with a photometric camera (Cool Snap HQ, Tucson, AZ, USA) using MetaVue imaging software (Molecular Devices, Inc., Sunnyvale, CA, USA). The βIII-tubulin and the CGRP-positive tissue areas at the subepithelial nerve plexus were calculated and compared with the total area using an image analysis program (Adobe Photoshop, Adobe Systems, Inc., San Jose, CA, USA). Only the nerve fibers in sharp focus for each image were traced to calculate the nerve area. The investigators obtaining the images and calculating the nerve area were blinded to the condition of each specimen. Ten different images of different areas within the injured zone were analyzed per rabbit.
To evaluate inflammatory cell responses, corneas from rabbits killed on days 2 and 4 after surgery were removed along the limbus and immediately fixed in 4% paraformaldehyde at room temperature for 2 hours, cut in half, and embedded in optimal cutting temperature (OCT) compound (Sakura Finetek USA, Inc., Torrance, CA, USA). Serial cryostat sections (6 μm) were cut, air dried, and stored at −20°C until use. For immunofluorescence staining, the sections were washed in PBS, blocked with 10% goat serum, 0.1% Tritron X-100 in PBS for 30 minutes at room temperature, and then incubated overnight at 4°C with a rat monoclonal anti-neutrophil antibody (1:500; Abcam, Cambridge, MA, USA), or a rat monoclonal [M1/70] anti-CD11b antibody (1:300; Abcam). Afterward, the sections were incubated with Alexa Fluor 488 goat anti-rat IG (H+L) antibody (Invitrogen) for 1 hour at room temperature. To localize the nuclei, 4′-6′-diamino-2-phenylindole (DAPI; Sigma-Aldrich Corp., St. Louis, MO, USA) staining was performed. The sections were examined with a Nikon fluorescent microscope under ×200 magnification. Positive cells were counted in a blind fashion from five randomly selected fields per cornea and averaged.