The media was aspirated, explants removed and the cultures were fixed in cold methanol or 4% paraformaldehyde. Subsequently, the cultures were washed in PBS followed by 0.1% Triton X treatment for 10 minutes. After blocking with 20% goat serum, wheat germ agglutinin (WGA)-alexa fluor 488 lectin (W11261; Life Technologies, Grand Island, NY, USA) or the primary antibodies to MUC5AC (SC-20118/Abmart, 14906-1-4/C580_130917; Santa Cruz Biotechnology, San Diego, CA, USA), keratin 7 (K7; 9021; Abcam, Cambridge, MA, USA), K14 (130102; Abcam), Ki-67 (NB-600-1252; Novus, Littleton, CO, USA), chemokine ligand 26 (CCL26; bs-15513R; Bioss, Woburn, MA, USA), chloride channel calcium activated channel 3 (CLCA3; 46512; Abcam), fas ligand (FASL; SC-834; Santa Cruz Biotechnology), IL-33 (SC-98659; Santa Cruz Biotechnology), trefoil factor 3 (TFF3; PA5-21081; Fisher, Waltham, MA, USA), restin-like molecule β (Relm-β; NB-200-204; Novus), or MUC2 (SC-15334, Santa Cruz Biotechnology) were applied for 1 hour or overnight. The cultures were rinsed with PBS and the fluorescent secondary antibodies were applied to antibody treated wells. The cultures were then counter stained with Hoechst (33342 DNA dye; Life Technologies), 1 drop of gel mount was applied and finally the cultures were cover slipped with #1.5 (8-mm diameter) round cover glass (72296-08; Electron Microscopy Sciences, Hatfield, PA, USA).