Lysates from retinal explants were obtained by sonication in buffer containing 20 mM Tris (pH 7.5), 5 mM EGTA, 5 mM EDTA, 2 mM dithioerythritol, and protease inhibitors (Complete Mini-EDTA-free; Roche, Indianapolis, IN, USA). The supernate was then collected by centrifugation at 16,100
g for 10 minutes at 4°C. Protein concentrations were measured using BCA assay (Thermo Fisher Scientific, Rockford, IL, USA), using bovine serum albumin as the standard. For immunoblotting, 10 μg of each sample was loaded and run on 4% to 12% NuPAGE with 2-(
N-morpholino)ethanesulfonic acid or MOPS buffer (Life Technologies). Proteins were then electrotransferred to polyvinylidene fluoride membrane at 100 V for 1.5 hours. After being blocked with 5% skim milk in Tris-buffered saline (Bio-Rad Lab, Hercules, CA, USA) containing 0.05% Tween 20, blots were probed with primary antibodies against the calpain-specific α-spectrin breakdown product at 150 kDa (SBDP150kDa) (1:1000 dilution),
31 calpain 1 (1:1000 dilution; Thermo Fisher Scientific, Waltham, MA, USA), calpain 2 (1:1000 dilution; Sigma-Aldrich Corp., St. Louis, MO, USA, or Gene Tex, Irvine, CA, USA), calpastatin (1:500 dilution; Santa Cruz Biotechnology, Dallas, TX, USA), γ-synuclein (1:1000 dilution; Abcam, Cambridge, MA, USA), GAPDH (1:2000 dilution; Abcam), or α-spectrin (1:2000 dilution; Enzo Life Science, Plymouth Meeting, PA, USA). Immunoreactivity was visualized with secondary antibodies conjugated to horseradish peroxidase enzyme (1:4000 dilution; Santa Cruz Biotechnology) and ECL Plus detection reagents (GE Heath Care, Buckinghamshire, UK). Images of membranes were captured with FluorChem FC2 imager (Cell Biosciences, Inc., Santa Clara, CA, USA). Band intensities were measured with ImageJ software (National Institutes of Health, Bethesda, MD, USA). To compensate for variability of staining between membranes, the densities of the bands were normalized to the density of endogenous GAPDH.