We performed Transcription Factor RT-PCR profiler arrays to investigate changes in the stem cell transcription factor expression profiles in the LGs of 12- to 13-week-old NOD and MRL/lpr mice compared to the appropriate control mice of the same age. In the LGs of MRL/lpr mice, we identified 12 differentially expressed genes (
Figs. 5A,
5B). Eleven genes were significantly downregulated, while only one was upregulated (
Figs. 5A,
5B). The expression of 18 transcription factors was altered significantly in the NOD mice. Sixteen of these genes were downregulated and the expression of 2 genes was increased. It is interesting that, although transcription factors array contains epithelially and mesenchymally expressed transcription factors, we found decreases in predominantly epithelially expressed transcription factors and factors regulating epithelial morphogenesis. The following transcription factors were downregulated in both mouse models: paired box protein-6 (
Pax6; MRL/lpr LGs, 2.9-fold decrease,
P = 0.00782; NOD LGs, 2.5-fold decrease,
P = 0.013728); Irx4 kruppel-like factor 4 (
Klf4; MRL/lpr LGs, 2.2-fold decrease,
P = 0.043124; NOD LGs, 2.6-fold decrease,
P = 0.014322); SRY-box containing transcription factor and 9 (
Sox9; MRL/lpr LGs, 2.1-fold decrease,
P = 0.027348; NOD LG, 1.7-fold decrease,
P = 0.001972); and SMAD family member 2 (
Smad2; MRL/lpr LG, 3-fold decrease,
P = 0.000452; NOD LG, 2.7-fold decrease,
P = 0.00085).
Pax6 regulates LG cell proliferation and branching morphogenesis and has a major role in maintenance of the adult ocular tissues.
59,60 Klf4 is the most abundant gene in ocular tissues, including the LG, and has important roles in cell proliferation and differentiation.
Sox9 expression is restricted to the LG epithelium.
58 Sox9 controls the expression of heparan sulfate-synthesizing enzymes (HSSE), which are required for the synthesis and function of heparan sulfate (HS), to promote FGF and other growth factors signaling and LG morphogenesis.
61 Other factors with decreased expression in MRL/lpr and NOD LGs were Iroquois homeobox protein-4 (
Irx4; MRL/lpr LG, 2.1-fold increase,
P = 0.004942; NOD LGs, 2-fold decrease,
P = 0.00045), mesenchymally expressed forkhead box P2 (
Foxp2; MRL/lpr LGs, 3.6-fold decrease,
P = 0.00017; NOD LGs, 1.8-fold decrease,
P = 0.04716), nuclear receptor subfamily 2 (
Nr2f2; MRL/lpr LGs, 3.7-fold decrease,
P = 0.003041; NOD LG, 2.2-fold decrease,
P = 0.042417) and Wilms tumor 1 homolog (
Wt1; MRL/lpr LGs, 2.2-fold decrease,
P = 0.000001; NOD LG, 2.4-fold decrease,
P = 0.000001).