Each of the AMPAR subunits can be alternatively spliced in the extracellular ligand-binding domain into two variants: flip and flop.
32 The alternatively splice variants differ in their kinetics, where the flip variant desensitizes slower than the flop variant and has an enhanced steady-state, allowing for a greater current amplitude.
32 To determine if OGD injury to RGCs alters the expression of AMPAR's subunit alternative spliced isoforms, the mRNA expressions of
Gria1-4's (GLUA1-4 gene) flip and flop isoforms were evaluated by qPCR and compared to RGCs treated to N-RGC medium (control), and following the incubation of purified RGCs in either GD or OGD medium for 3, 4, 6, and 8 hours (
Supplementary Fig. S2A). The relative expression of total
Gria2,
3, and
4 compared to
Gria1 (1.1 ± 0.2) of the control RGC group were 1.0 ± 0.1-fold, 0.2 ± 0.02-fold (
P < 0.01), and 0.5 ± 0.1-fold (
P < 0.01), respectively. (
Supplementary Fig. S2B) Retinal ganglion cells maintained in N-RGC Medium had an even expression of flip and flop isoforms for
Gria1,
2, and
4. However,
Gria3 flop expression (0.3 ± 0.3-fold,
P < 0.001) was significantly lower than
Gria3 flip expression (1.0 ± 0.1) (
Supplementary Fig. S2B). Total
Gria1 expression following RGC injury (
Fig. 7A) did not change in OGD conditions; however, RGCs incubated in GD conditions significantly decreased total
Gria1 expression at the 4-hour (0.14 ± 0.4-fold,
P < 0.001) and 8-hour (0.37 ± 0.01,
P < 0.01) time points. All
Gria1 flip mRNA expression significantly decreased by at least 50% at all time points (
P < 0.01) when RGCs were incubated in OGD, though at 8 hours
Gria1 flip in GD conditions increased by 19 ± 9.35-fold.
Gria1 flop's mRNA expressions were similar to
Gria1 flip's expression in OGD, whereas
Gria1 flop expression was significantly decreased compared to RGC Medium at the 4- (0.37 ± 0.05-fold;
P < 0.001), 6- (0.61 ± 0.02-fold;
P < 0.05), and 8-hour (0.08 ± 0.02-fold,
P < 0.001) time points. There also was a significant (
P < 0.01) decrease of
Gria1 flop expression of RGCs in 4 hours GD medium by more than 80%.
Gria2 total mRNA expression decreased significantly (40%) at the 4-hour time point for the GD and OGD conditions (
P < 0.001) and by at least 50% at the 8-hour time point for the OGD condition (
P < 0.01;
Fig. 7B). No significant changes were observed in the
Gria2 flip expression over the 8-hour time points; however,
Gria2 flop expression significantly decreased in a similar manner as
Gria2 total mRNA expressions. This effect was seen at greater than a 60% decrease at the 4-hour (
P < 0.001) time point for the GD and OGD conditions and a 70% decrease in expression (
P < 0.001) following 8 hours of incubation in OGD conditions. Only the 6-hour incubation of OGD condition significantly decreased
Gria3 total expression, whereas at the other time points there was no significant effect on mRNA expression (
Fig. 7C). No changes of
Gria3 flip mRNA expression were observed, but
Gria3 flop mRNA expression significantly decreased in OGD conditions at 4 (0.37 ± 0.03-fold;
P < 0.001), 6 (0.41 ± 0.11-fold;
P < 0.001), and 8 (0.25 ± 0.13-fold) hours. Lastly,
Gria4 total (
Fig. 7D) expression significantly increased by 39.50 ± 19.24-fold (
P < 0.01) during 8 hours of GD exposure, whereas 3- (
P < 0.01), 4- (
P < 0.01), and 8-hour (
P < 0.05) exposures of OGD significantly decreased
Gria4 flip mRNA expression levels by more than 35%.
Gria4 flop also decreased significantly at 4 hours GD (0.25 ± 0.08-fold;
P < 0.01) incubation and 8 hours OGD (0.30 ± 0.01-fold,
P < 0.01) incubation. A summary of the effects of normoxia and hypoxia on flip and flop isoforms over the 8-hour time points is presented in
Table 3.