Participants self-reported smoking status as either never smoked, past smoker, or current smoker. We extracted separate data on the frequency of consuming fish (e.g., salmon, tuna, and sardines) from a food-frequency questionnaire. Genotypic status was available for the complement factor H (
CFH) single nucleotide polymorphism (SNP)
rs1061170 in 2041 baseline participants who returned at BMES-2 and for the age-related maculopathy susceptibility gene 2 (
ARMS2) SNP
rs10490924 in 1893 baseline participants who returned at BMES-2. Two sources of genotypic information were used.
21 TaqMan assays (Applied Biosystems, Foster City, CA, USA) had been performed to provide specific genotyping of
rs1061170 in 1925 individuals and
rs10490924 in 638 individuals. In addition, BMES genotyping was also carried out for a genome-wide association study (GWAS) using a custom array (Human 670-Quad, version 1; Illumina, Inc., San Diego, CA, USA) at the Wellcome Trust Centre for Human Genetics, Sanger Institute, Cambridge, United Kingdom, as part of the Wellcome Trust Case Control Consortium 2. After quality control, genotype imputation was performed using a genetic variation catalogue (1000 Genomes, version 1, EMBL-EBI, Heidelberg, Germany) and IMPUTE software (University of Oxford, UK). Imputed genotypic status was available for
rs1061170 in 1657 baseline participants who returned at BMES-2 and
rs10490924 in 1802 baseline participants who returned at BMES-2. This information on genotyping status from imputed data was used where TaqMan assays were not available, for
rs1061170 in 116 individuals and for
rs10490924 in 1255 individuals. Concordance rates between typed and imputed SNP values were 99.6% for
rs1061170 and 99.2% for
rs10490924. Imputation data metrics were as follows: Imputation
R2 values were 0.968 for
rs1061170 and 0.996 for
rs10490924; the proportion of the sample with missing SNP information was 8.8% for
rs1061170 and 0.5% for
rs10490924; Hardy-Weinberg equilibrium
P values were 0.79 for
rs1061170 and 0.95 for
rs10490924; minor allele frequencies were 0.39 for
rs1061170 and 0.22 for
rs10490924. We inspected all current medications, and participants also self-reported past medication use, which allowed us to determine whether participants were currently receiving or had used thyroxine in the past.