Full-thickness corneal tissue was fixed in 4% paraformaldehyde for 10 minutes at room temperature, followed by perfusion in 0.5% Triton X-100 (Wako Pure Chemical Industries, Ltd., Osaka, Japan) for 5 minutes at room temperature to increase tissue permeability. Nonspecific binding was blocked using 2% BSA or 2% goat serum for 1 hour at room temperature. The corneal endothelium was stained with function-related markers: ZO-1 (1:200; Zymed Laboratories, South San Francisco, CA, USA) and Na
+/K
+-ATPase (1:200; Upstate Biotechnology, Lake Placid, NY, USA). The presence of immune cells was determined using primary antibodies against CD3 (pan T lymphocyte, 1:100; Abcam, Cambridge, UK), CD4 (T-helper cells, 1:100; R&D Biotechnology, Minneapolis, MN, USA), CD8 (cytotoxic T cells, 1:100: R&D Biotechnology), CD20 (B lymphocytes, 1:100: Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), CD68 (macrophages, 1:100; Santa Cruz Biotechnology, Inc.), cathepsin G (neutrophils, 1:100; Abcam), TNF-α (1:100, Abcam), and IFN-γ (1:100, Abcam). The secondary antibody was Alexa Fluor 488-conjugated goat anti-mouse (Life Technologies, Carlsbad, CA, USA) or Alexa Fluor 594-conjugated goat anti-rabbit IgG (Life Technologies), used at a 1:1000 dilution. Cell morphology was evaluated after actin staining with a 1:400 dilution of Alexa Fluor 635-conjugated phalloidin (Life Technologies). Nuclei were stained with 4′,6-diamidino-2-phenylindole (DAPI; Vector Laboratories, Burlingame, CA, USA). The samples were observed by fluorescence microscopy (model TCS SP2 AOBS; Leica Microsystems, Wetzlar, Germany) or a confocal laser scanning electron microscopy (LEICA TCS SP8 Multiphoton; Leica Microsystems). Image J (
http://imagej.nih.gov/ij/; provided in the public domain by the National Institutes of Health, Bethesda, MD, USA) was used to create three-dimensional reconstructions.