Corneas were harvested at the end of the study, then were fixed in acetone, frozen in optimal cutting temperature compound (OCT), and stored at −80°C until analysis. Frozen OCT blocks were either sectioned (6 μm) and mounted on glass slides or melted in room temperature for immunohistochemistry. Cornea sections were blocked with 5% donkey serum, 0.3% Triton X-100 in Tris-buffered saline (TBS) and stained with Keratin 12 primary antibody (Abnova, Jhongli, Taiwan) for 1 hour at room temperature. Sections were washed with TBS and incubated for 1 hour in secondary antibody (Rhodamine Red-X [RRX] AffiniPure Donkey Anti-Rabbit IgG; Jackson ImmunoResearch, Inc., West Grove, PA, USA). Whole-mount corneas were blocked in 3% BSA containing 1% anti-FcR monoclonal antibody for 1 hour at room temperature first and then incubated overnight at 4°C on the shaker with conjugated fluorescent antibodies against CD45 (pan leukocyte marker, PE anti-mouse CD45; Biolegend, San Diego, CA, USA) and beta-III tubulin (neuronal marker, NorthernLights NL637; R&D systems, Minneapolis, MN, USA). Corneas were washed three times in PBS for 10 minutes each, flattened with three radial incisions, and mounted on a glass slide. A mounting media containing 4′,6-diamidino-2-phenylindole (DAPI) (nuclear staining) (Vectashield; Vector Laboratories, Inc., Burlingame, CA, USA) was used before cover slipped.
Hematoxylin and Eosin (H&E) staining was performed using an automatic histology stainer (Shandon Varistain Gemini; Thermo Fisher Scientific, Inc., Pittsburgh, PA, USA), according to the manufacture's protocol. Frozen cornea section slides were water washed first to remove the OCT then loaded inside the machine. Slides were stained with hematoxylin for 2 minutes and then were incubated with clarifier for 1 minute. Slides were then incubated with bluing reagent for 1 minute. Washed slides were then incubated for 1 minute in 95% alcohol and stained with eosin for 2 minutes. During the staining procedure, the slides were washed with running water before adding a new reagent. Hematoxylin and Eosin–stained slides were dehydrated in a 95% and 100% ethanol, respectively. Finally, the slides were dipped in xylene, and cover slipped.
Fluorescent-labeled slides were imaged using a confocal microscope (Nikon A1r; Nikon Instruments, Inc., Melville, NY, USA). Three different fields from the peripheral cornea and one central field were imaged in each cornea. Captured whole-stack images were analyzed with IMARIS software version 8.0 (Bitplane AG, Zurich, Switzerland) to calculate the number of CD45 (pan leukocyte marker)-positive cells in the whole cornea and Ki-67 (epithelial cell proliferation marker)-positive cells in the epithelium. The number of cells in peripheral corneal fields were averaged for each cornea. Three-dimensional (3D) images of corneal nerves were rendered using IMARIS software and stromal versus subbasal nerves were separated according to their anatomic location in the cornea. Stromal and subbasal corneal nerve images were traced separately using NeuronJ
14 (in the public domain,
http://www.imagescience.org/meijering/software/neuronj/), a free semiautomatic software. Total nerve length in each cornea was measured by averaging total nerve length in three different peripheral field images and in one central field image. Total nerve length in periphery and central cornea was reported as nerve density in millimeters per millimeters squared.
Hematoxylin and Eosin–stained slides were imaged using a bright field microscope (Nikon Eclipse E800). Four sections were selected and 2 to 4 areas from each section were imaged. Representative sections were selected and the thinnest and thickest part of the epithelium plus the area of epithelium were measured in each cornea section by using ImageJ software.
15