Eyes were harvested at 10 hours, 7 days, 1 month, and 2 months after NaIO3 injection and fixed in 10% formalin overnight followed by paraffin embedding. The 12 o'clock position of each eye was marked before enucleation for orientation. Paraffin sections (6 μm) were obtained using a microtome (Shandon AS325; Thermo Scientific, Cheshire, England). Only sections crossing the optic nerve for each eye were used. Hematoxylin (Fisher Scientific) and eosin (Fisher Scientific) staining was performed, and images were captured with a microscope (Leica DM6000; Leica Corp.). For immunohistochemistry, sections were blocked with 10% goat serum (Sigma-Aldrich Corp.) in 0.2% Triton X-100 (Sigma-Aldrich Corp.) PBS for 1 hour after de-paraffinization and incubated with primary antibodies in a humidity chamber overnight at 4°C. Primary antibodies were as follows: Fas, 1:100 (Santa Cruz, Dallas, TX, USA); FasL, 1:100 (ab15285; Abcam, Cambridge, MA, USA); RPE65, 1:200 (a kind gift from Debra Thompson, University of Michigan, Ann Arbor, Michigan, USA); high mobility group box 1 (HMGB1), 1:200 (NB100-2322S; Novus Biologicals). After washing and incubation for 1 hour at room temperature with secondary antibodies, sections were counterstained with ProLong Gold with 4′,6-diamidino-2-phenylindole (DAPI, Invitrogen) to reveal cell nuclei. Images were obtained using a confocal microscope (Leica SP5 microscope; Leica Corp.) and were taken at the comparable area of sections. All images in each individual experiment were acquired with a fixed detection gain.