The PW-DED and CL-DED groups shared a total of 541 and 533 common peaks with the control group, respectively. Statistical analysis of each comparison identified a list of peaks that were significantly differentially expressed (
Tables 3,
4,
5;
Figs. 1,
2). Some of the significantly downregulated peaks correspond to isotopic peaks from the same lipid species (
Figs. 1,
2). These peaks were assigned as isotopic based on differences in
m/
z values, and these assignments were supported by consistent intensity ratios and
P values. For instance, four type II diester peaks,
m/
z 1003.9517,
m/
z 1004.9544,
m/
z 1005.9642, and
m/
z 1006.9670, were found to be down-regulated in dry eye meibum samples. The
m/
z differences between the first and last two peaks were 1.0027 and 1.0028, respectively, which is close to that expected for neighboring isotopic peaks due to the differences between
12C and
13C (1.00335). The
m/
z difference between the first and third peaks was 2.0125, which is close to that expected for the difference due to one double bond (i.e., two hydrogen atoms [2.0141]). As a result, these four peaks corresponded to isotopic peaks of two molecular species, DE-II 66:3 and DE-II 66:2, respectively. The
P values for the two isotopic peaks (
m/
z 1003.9517 and
m/
z 1004.9544) of DE-II 66:3 were 0.007 and 0.005, respectively, whereas the corresponding intensity ratios were 0.71 and 0.72, respectively, both sets of values being almost identical. Similarly, for the two isotopic peaks (
m/
z 1005.9642 and
m/
z 1006.9670) of DE-II 66:2, the
P values were 0.031 and 0.036, respectively, and the intensity ratios were 0.72 and 0.73, respectively, both sets of values being almost the same, too. However, the
P values for DE-II 66:3 were different from those for DE-II 66:2. Therefore generally, the
P values and intensity ratio for isotopic peaks of the same molecular species were typically quite close, although there could be exceptions due to the variation in signal-to-noise ratios.