The presence and concentration of 19 molecules were determined in tear samples by a multiplex bead-based array (19x-MPXHCYTO-60 Human Cytokine/Chemokine Panel; Millipore, Watford, UK) using a Luminex IS-100 (Luminex Corporation, Austin, TX, USA). The samples were assayed for epidermal growth factor (EGF), fractalkine/CX3CL1 (fractalkine), IL-1 receptor antagonist (IL-1Ra), IL-1β, IL-2, IL-4, IL-5, IL-6, IL-8/CXCL8 (IL-8), IL-10, IL-12p70, IL-13, IL-17A, interferon inducible protein (IP)-10/CXCL10 (IP-10), eotaxin 1/CCL11 (eotaxin), IFN-γ, VEGF, TNF-α, and regulated on activation, normal T cell expressed and secreted (RANTES)/CCL5 (RANTES).
We analyzed the samples as reported previously
14,20,26,27 following the manufacturer's protocol. Data were stored and analyzed using the “Bead View Software” (Upstate, Millipore Upstate-Millipore, Dundee, UK).
To impute values out of range, we used the regression on order statistics method. It performs a regression to impute low values assuming log-normal quantiles for samples with a detection rate of at least 50%, after checking that the data followed a log-normal distribution. To accomplish this, the nondetects and data analysis (NADA) R package was used.
28 Cytokine expression data were transformed using the logarithmic base 2 scale.