Mice were deeply anesthetized with a mixture of ketamine hydrochloride (30–40 mg/kg) and xylazine (3–6 mg/kg) at different time points. Retinas were dissected free of the vitreous and sclera in carboxygenated Ames' Medium (Sigma, St. Louis, MO, USA), and then fixed in 4% paraformaldehyde (PFA) in 0.1 M phosphate buffer, pH 7.4, for 0.5 to 1 hour. Some of retinas were sectioned serially at a thickness of 10 to 12 μm using a cryostat. Both whole-mounted retinas and vertical sections were blocked in a solution containing 4% normal goat serum (NGS), 1% bovine serum albumin (BSA), and 0.3% Triton X-100 in PBS for 1 hour. Retinas were then incubated in a primary antibody from overnight to 5 days at 4°C. The following primary antibodies were applied: rabbit antibody to GFP (1:500; Invitrogen, Carlsbad, CA, USA), rat anti-mouse CD68 (1:500; AbD Serotec, Raleigh, NC, USA), and rabbit anti-red/green opsin (1:500; Chemicon, Temecula, CA, USA). After rinsing, a secondary antibody conjugated to either Alexa 488 or Alexa 594 (1:500; Invitrogen) was applied for 2 hours at room temperature. Whole-mounted retinas and vertical sections were rinsed and cover slipped in Vectashield mounting medium (Vector Laboratories, Burlingame, CA, USA).
Confocal micrographs of fluorescent specimens from retinal whole-mounts and vertical sections were captured using a Zeiss LSM 700 Meta Axioplan 2 laser scanning confocal microscope (Carl Zeiss, Oberkochen, Germany) equipped with argon and helium-neon lasers. Plan-Apochromat ×63/1.4 or ×40/1.4 oil immersion objective lenses were used. Images scale was calibrated, and if necessary, brightness and contrast were adjusted using Photoshop CS3 software (Adobe Systems, San Jose, CA, USA).