Immunofluorescence (IF) staining of HLA-A, HLA-B/C, and B2M on human paraffin-embedded CM sections was performed as previously described.
19,23 For immunohistochemistry (IHC) on mouse xenografts, the procedures were performed as described.
24 In short, primary antibodies HCA2 (mouse, anti-HLA-A, IgG1, MUB2036P, 1:50; Nordic Mubio, Uden, The Netherlands), HC10 (mouse, anti-HLA-B/C, IgG2a, MUB2037P, 1:100; Nordic Mubio), and B2M (rabbit, Z0311, 1:2000 [IHC], 1:1000 [IF]; DAKO, Glostrup, Denmark) were used for both IF and IHC staining. Isotype control staining was obtained by replacing primary antibodies with control antibodies with respective isotypes antibodies. The detailed information of secondary antibodies is in
Supplementary Table S1. IF images were taken using a Zeiss LSM 700 confocal scanning microscope (Zeiss, Breda, The Netherlands). Based on the tumor size, one to five representative images at high power (250×) were randomly selected from different areas for scoring. Tumor areas were distinguishable from normal tissue by DAPI (4′,6-diamidino-2-phenylindole; H-1200; Vector Laboratories, Burlingame, CA, USA) staining. Two experienced independent observers (JC and NB or EJ), blinded to the clinicopathologic data, evaluated the intensity and percentage of HC10, HCA2, and B2M expression separately. In case of discrepancies, a consensus was reached by simultaneous analysis. The semiquantitative scoring system was obtained from prior studies
23,25–27: intensity was scored as 0 (absent), 1 (weak), 2 (moderate), and 3 (strong), and the percentage of positive cells as 0 (0%), 1 (1% to 5%), 2 (6% to 25%), 3 (26% to 50%), 4 (51% to 75%), and 5 (76% to 100%). A single value was reached by adding intensity and percentage and was used to create three categories: negative (0 to 2), weak (3 to 6), and positive expression (7 to 8). Stromal cells served as an internal positive control. The B2M staining of one tumor was not scorable and was therefore excluded. The images of hematoxylin and eosin (HE) staining were captured using the Philips Image Management System 2.2 (Philips, Eindhoven, The Netherlands). The staining and scoring method of tumor-infiltrating lymphocytes (CD3, CD3
+CD8
+, CD3
+CD8
−, CD3
+CD8
−Foxp3
+, and CD3
+CD8
−Foxp3
− T cells, and CD68 and CD68
+CD163
+ macrophages) was performed as previously described.
20 Expression of PD-L1 on tumor or stromal cells and of PD-1 was determined as described.
20