Colonies were harvested with dispase (2.5 mg/mL; Roche) and treated with trypsin-EDTA (0.25%; Gibco) to isolate single cells. Single cells were counted using a hemocytometer and washed in SHEM growth medium before setting onto slides with a cytospin (Cytofuge; Fisher Scientific, Houston, TX, USA). Cells were fixed with 4% paraformaldehyde at 20°C for 10 minutes, washed with phosphate-buffered saline (PBS), incubated with 1% bovine serum albumin (BSA) and 0.5% Triton X-100 (Sigma-Aldrich Corp.) in PBS at 20°C for 30 minutes, and incubated with the following primary antibodies at 4°C overnight: K12 (Santa Cruz Biotechnology, Dallas, TX, USA; sc-25722, 1:100), K14 (Fisher Scientific; MS-115-R7, 1:50), p63α (Cell Signaling Technology, Danvers, MA, USA; 4892, 1:100), Ki67 (DAKO, Carpinteria, CA, USA; M7240, 1:100). Cells were washed with PBS, then incubated with the secondary antibodies goat anti-mouse IgG, Alexa Fluor 488 (ThermoFisher Scientific, A11029, 1:500), goat anti-rabbit IgG, Alexa Fluor 546 (ThermoFisher Scientific, A11035, 1:500) at 20°C for 1 hour. After washing with PBS, nuclei were labeled with Hoechst 33342 (4 μg/mL; Invitrogen) at 20°C for 15 minutes and mounted in Fluoromount medium (Sigma-Aldrich Corp.).
Images were taken with the digital inverted Keyence BZ-X710 fluorescence microscope (Osaka, Japan) and the image capture system BZ-X Viewer. Quantification of marker expression was performed by using the BZ-X analyzer software (version 1.3.0.3) and the hybrid cell count function. By specifying a mask area, the software extracts information on multiple parameters such as intensity of fluorescence signal in different channels, cell counts, and target area measurements. Cells expressing high levels of p63α (p63α
bright cells) were also quantified following this method as previously described.
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