LCM was efficient at targeted removal of cell bodies from RGC with and without neurites in naïve retinal cultures treated with combined NTF (
Fig. 2A). When RGC with and without neurites were compared, regeneration-related
gap43,
Sprr1a, c
/ebp-epsilon,
atf3, and
galanin mRNA were 8-, 34-, 30-, 5.4-, and 10-fold upregulated in RGC with neurites, respectively, while SOCS3 mRNA levels remained unchanged (
Fig. 2C). Analysis of components of the BMP4/Smad1 pathway in RGC treated with combined NTF in culture also showed that
bmp4,
smad1,
smad4,
smad5,
smad8,
smif, and
msg1 mRNA were upregulated 3.2-, 4.5-, 5.5-, 2-, 3-, 3-, and 2-fold, respectively (
P < 0.05–
P < 0.0001), in RGC with neurites compared to RGC without neurites (
Fig. 2D). These results suggested that RGC that grow neurites in culture have a regenerative phenotype and upregulate genes in the BMP4/Smad1 pathway.