A confocal microscope (LSM700, Carl Zeiss) equipped with 405, 488, 555, and 635 nm lasers was used for imaging. Tiled imaged stacks were taken with a ×20 air objective (Plan Apochromat, 20×/0.8, #420650-9901) of the entire vibratome section (approximately 3 mm in length and 100 μm in thickness) at a resolution of 2048 × 2048 pixels with z-axis step sizes from 0.89 to 1.15 μm for each optical plane. In addition, stacks of images were taken from some regions of interests using a ×40 water immersion objective (Plan Apochromat, 340/1.2, #421767- 9970). Depth readings taken using the air objective were corrected for the refractive index of the mounting medium (Vectashield 1.45; Vector Laboratories, Burlingame, CA, USA). The contrast and brightness of the images was adjusted using imaging software (Zen Black; Carl Zeiss Microscopy, Thornwood, NY, USA), image editing software (Adobe Photoshop; Adobe, Inc., Mountain View, CA, USA), or microscopy image analysis software (Imaris; Bitplane, Zurich, Switzerland).