July 2019
Volume 60, Issue 9
Free
ARVO Annual Meeting Abstract  |   July 2019
Deep learning based hybrid OCT-OCTA segmentation of Bruch’s membrane in pathology
Author Affiliations & Notes
  • Julia Schottenhamml
    Pattern Recognition Lab, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
    Electrical Engineering and Computer Science and Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
  • Stefan B Ploner
    Pattern Recognition Lab, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
    Electrical Engineering and Computer Science and Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
  • Eric M Moult
    Electrical Engineering and Computer Science and Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
  • Jay S Duker
    New England Eye Center, Tufts Medical Center, Boston, Massachusetts, United States
  • Nadia K Waheed
    New England Eye Center, Tufts Medical Center, Boston, Massachusetts, United States
  • James G Fujimoto
    Electrical Engineering and Computer Science and Research Laboratory of Electronics, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States
  • Andreas K Maier
    Pattern Recognition Lab, Friedrich-Alexander-University Erlangen-Nuremberg, Erlangen, Germany
  • Footnotes
    Commercial Relationships   Julia Schottenhamml, None; Stefan Ploner, IP related to VISTA (P); Eric Moult, IP related to VISTA (P); Jay Duker, Carl Zeiss Meditec, Inc. (C), Carl Zeiss Meditec, Inc. (F), Optoview, Inc. (C), Optovue, Inc. (F), Topcon Medical Systems, Inc. (F), Topcon Medical Systems, Inc. (C); Nadia Waheed, Carl Zeiss Meditec, Inc. (F), Heidelberg (F), MVRF (F), Nidek (F), Optovue, Inc. (C), Topcon Medical Systems, Inc. (F); James Fujimoto, AFOSR (F), Carl Zeiss Meditec, Inc. (P), IP related to VISTA (P), NIH (F), Optovue, Inc. (I), Optovue, Inc. (P), Optovue, Inc. (C), Topcon Medical Systems, Inc. (F); Andreas Maier, None
  • Footnotes
    Support  None
Investigative Ophthalmology & Visual Science July 2019, Vol.60, 2210. doi:
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    • Get Citation

      Julia Schottenhamml, Stefan B Ploner, Eric M Moult, Jay S Duker, Nadia K Waheed, James G Fujimoto, Andreas K Maier; Deep learning based hybrid OCT-OCTA segmentation of Bruch’s membrane in pathology. Invest. Ophthalmol. Vis. Sci. 2019;60(9):2210.

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      © ARVO (1962-2015); The Authors (2016-present)

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Abstract

Purpose : Segmenting Bruch’s membrane (BM) is an important step for analysing the choriocapillaris in optical coherence tomography (OCT) and OCT angiography (OCTA). Manual segmentation of volumetric OCT/OCTA is impractically laborious, motivating automatic approaches. However, the development of automatic algorithms for BM segment is hindered by the presence of pathology, which often leads to significant chorio-retinal distortions. In this study we introduce a novel segmentation algorithm that uses convolutional neural network (CNN) to compute the edge-weights of a joint OCT-OCTA graph-cut algorithm.

Methods : We compare the performance of our CNN-weighted joint OCT-OCTA algorithm to that of four other graph-cut methods, whose edge-weights are determined by: (1) axial-OCT-gradient; (2) axial-OCTA-gradient; (3) CNN trained on OCT; (4) CNN trained on OCTA. The training, validation and test set each consist of four manually labelled volumes (500 B-scans each) per group: healthy controls, choroidal neovascularization (CNV), mild non-proliferative diabetic retinopathy (NPDR), and nascent geographic atrophy (nGA). All algorithm parameters were determined on the validation set, and the CNN architectures of the three learning methods were kept constant to facilitate comparison. The algorithms were quantitatively evaluated by computing the A-scan-wise absolute difference between the automatic and the manual segmentation results.

Results : The absolute pixel-wise errors between the manual and automatic segmentation of the different approaches are summarized in Figure 1.

Conclusions : CNN-weighted joint OCT-OCTA segmentation appears promising to work reliably over a wide range of pathologies, particularly in the CNV group. Further studies with larger cohorts are needed to elucidate the advantages of combining OCT and OCTA information in segmentation.

This abstract was presented at the 2019 ARVO Annual Meeting, held in Vancouver, Canada, April 28 - May 2, 2019.

 

Boxplots of the absolute axial pixel difference of the different algorithms (GO = gradient OCT, GA = gradient OCTA, CO = CNN OCT, CA = CNN OCTA, COA = CNN OCT-OCTA) in the four groups, and in total.

Boxplots of the absolute axial pixel difference of the different algorithms (GO = gradient OCT, GA = gradient OCTA, CO = CNN OCT, CA = CNN OCTA, COA = CNN OCT-OCTA) in the four groups, and in total.

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