In vivo, retinal lamination in the chick embryo occurs roughly between E5 and E11 (cf.
Supplementary Figs. 1b,
1d,
1f,
1h). A row of cells in the middle of the IPL migrating toward the GCL represent displaced amacrine cells.
50,66,67 By E11, processes of cholinergic amacrine cells (SACs; stained green for ChAT in
Fig. 4b;
Supplementary Fig. 1h) have formed two synaptic subbands, or sublaminae
a and
d (
a, d in
Fig. 4b). As
ipl differentiation proceeded in rosetted spheroids, an organized pattern of cholinergic cell arrangement emerged (cf.
Figs. 3i,
3j). By div5-6, many AChE
+ cells were found at
inl/ipl border (
Fig. 4a, red; cf. also
Figs. 6a,
6b). Only a few ChAT
+ cells were close by, but many of them were found located in inner
ipl with a majority of them coexpressing AChE (
Fig. 4a, yellow). ChAT
+ SACs at the
inl/ipl border projected towards the inner
ipl (
Fig. 4a, white arrows). As differentiation proceeded, ChAT
+ side processes established an outer and an inner ring of
ipl subbands (inside of stippled circle of
Fig. 5a). Thus, the pattern of AChE
+ and ChAT
+ cell arrangements can easily be compared with that of the in vivo retina (cf.,
Figs. 6b,
6c;
Supplementary Figs. 1g,
1h).
55 Double staining of ChAT with vimentin demonstrated how processes of ChAT
+ and vimentin
+ cells run closely in parallel, and that ChAT
+ cells repeatedly can be found pair-wise, one at
inl/ipl border, and the other inside of the outer subband a (
Fig. 5a, see stippled circle, and cell pair of 1/1′). In fact, ChAT immunostaining distinguished three different subtypes of SACs (
Fig. 5a', red): those with their cell bodies located at
inl/ipl border (
Fig. 5a', stars), those located internally in
ipl (
Fig. 5a', triangles), and a small number of cells located further inside of
inl with thin long processes into
ipl (
Fig. 5a', arrow). Further, a subpopulation of cholinergic SACs can be marked by calretinin (CR). As
Figure 5b shows, calretinin (CR) and ChAT coexpressing cells were arranged pairwise (numbered pairs in
Fig. 5b), while cells expressing only CR are located on
inl/ipl border (
Figs. 5c–f). Originating there, CR
+ processes typically targeted strongly stained Islet-1
+ cells in center of
ipl (weaker stained Islet-1
+ cells were found in
inl;
Fig. 5c). At div4 only few CR
+ cells were found at the
ipl periphery (
Fig. 5d), indicating that CR
+ amacrine cells differentiated after ChAT
+ amacrine cells (cf.
Fig. 4c). At div6, their long processes projecting into the
ipl were closely attached to vimentin
+ processes (
Fig. 5e, detail in
5f), indicating that CR processes were guided by MCPs. During the same period (div3-6), MCP processes became numerous and spatially organized. By div6, many vimentin
+ processes spread in parallel from the
ipl center into neighboring
inl areas (
Figs. 5a,
5e); at the very
ipl center, several MCP processes bent perpendicularly (
Fig. 5e, near dashed circle).