To assess the effect of the combination of variants at the
CFH locus in the same allele on systemic complement activation, we evaluated the effect of distinct haplotypes across the
CFH locus on systemic complement activation levels using the two
CFH SNPs in combination with the
CFB SNP. As seen in
Table 4, the
CFH haplotype CG, including the combination of allele C in
CFH rs10922109 and allele G in
CFH rs570618, with the combination of allele G in
CFB rs116503776, had the highest complement activation level (Log C3d/C3 ratio 1.61;
Table 4) and was taken as the reference haplotype. Other
CFH haplotypes with
CFB variant combinations had significantly lower systemic complement activation levels compared with the reference haplotype (P ≤ 0.001), except for haplotypes with a frequency of less than 2% in the cohort study. Because the minor allele A of
CFB rs116503776 was not very common in the study cohort, we only used the two
CFH variants to divide the patients and controls in two groups: individuals carrying the
CFH haplotype CG, with the two complement raising alleles, and individuals carrying other
CFH haplotypes. Then, we looked again for differences in complement activation between the AMD disease stages separately for each haplotype group. In participants with the
CFH haplotype CG (
Fig. 1B), the differences in complement activation levels between the control group and the AMD disease stages became more pronounced as compared with participants with other
CFH haplotypes that are associated with lower complement activation levels (
Fig. 1C). In participants with the
CFH haplotype CG, patients with intermediate AMD had a significant higher complement activation level when compared with control individuals (P = 0.013) and patients with central GA had the highest complement activation levels when compared with controls (difference of 0.29 Log C3d/C3 ratio; P = 0.035). These alterations in complement activation levels were not caused by differences in the distribution of genetic variants over the AMD disease stages, since there was no significant difference in the distribution of
CFH haplotype CG among the AMD disease groups (
Supplementary Table S5). In participants with other
CFH haplotypes that are associated with lower complement activation levels, the level of complement activation did not differ between the disease stages (
Fig. 1C).