DNA samples were purchased and we assessed genetic variants associated with advanced AMD using array-based and gene sequencing platforms, as previously described.
17,25–27 All single nucleotide polymorphisms had a high genotype call rate (>98%). Variants in this study represented common and rare variants in all known genetic pathways: complement factor H (
CFH) Y402H (rs1061170);
CFH rs1410996;
CFH R1210C (rs121913059);
CFH N1050Y (rs35274867); complement factor I (CFI) (rs10033900); complement factor B (
CFB) R32Q (rs641154); complement component 2 (
C2) E318D (rs9332739); complement component 3 (
C3) R102G (rs2230199);
C3 K155Q (rs147859257); complement component 9 (
C9) (rs34882957); vascular endothelial growth factor A (
VEGFA) (rs943080); transforming growth factor, beta receptor I (
TGFBR1) (rs334353); hepatic lipase (
LIPC) (rs10468017); cholesteryl ester transfer protein (
CETP) (rs3764261); ATP binding cassette subfamily A member 1 (
ABCA1) (rs1883025); apolipoprotein C1 (
APOC1) (rs4420638); apolipoprotein H (
APOH) (rs1801689); age-related maculopathy susceptibility 2 (
ARMS2/HTRA1) (rs10490924); Pellino E3 ubiquitin protein ligase family member 3 (
PELI3) (rs145732233); TNF receptor superfamily member 10a (
TNFRSF10A) (rs3278062); solute carrier family 16 member 8 (
SLC16A8) (rs8135665); paired immunoglobin-like type 2 receptor beta and alpha (
PILRB/PILRA) (rs11769700); transmembrane protein 97 (
TMEM97) (rs704); Collagen type VIII alpha 1 chain (
COL8A1) (rs13095226); collagen type IV alpha 3 chain
(COL4A3 (rs11884770); chymotrypsinogen B1 (
CTRB1) (rs8056814); A disintegrin-like and metalloprotease with thrombospondin type 1 motif 9 (
ADAMTS9) (rs6795735); tissue inhibitor of metalloproteinases inhibitor 3 (
TIMP3) (rs9621532); DNA repair protein RAD51 paralog B (
RAD51B) (rs8017304); nuclear protein localization 4 homolog/tetraspanin 10
(NPLOC4/TSPAN10) (rs9895741); and heat shock protein family H (
HSPH1/
B3GALTL) (rs9542236).