Corneas were harvested and homogenized in sterile PBS containing protease inhibitors—10 µg/mL aprotinin (catalog no. A6279; Sigma-Aldrich, Natick, MA, USA), 10 µg/mL leupeptin (catalog no. 1167; Tocris Bioscience, Bristol, UK), and 10 µg/mL pepstatin (catalog no. 1190; Tocris)—using 1.5-mL snap-cap Eppendorf tubes (Advanced Bullet Blender Storm 24 (Troy, NY, USA)), three times for 5 minutes each at the maximum setting. Samples were then centrifuged (1 minute, 10,000g), and the protein content in the clarified supernatant was quantified using a Pierce BCA Protein Assay Kit (catalog no. 23227; Thermo Fisher Scientific, Waltham, MA, USA).
The proteome profile was performed using a mouse angiogenesis proteome array according to the manufacturer's recommendations (catalog no. ARY015; R&D Systems). The relative intensity of the blots was quantified using the open-source platform for biological image analysis, Image J software (National Institutes of Health, Bethesda, MD, USA). Mouse Magnetic Luminex Assays (catalog no. MMMP1MAG-79K; EMD Millipore, Burlington, MA, USA) were used to quantify pro-/anti-angiogenic factors, including Serpin-E1, FGF-2, VEGF-A, tissue inhibitor of metalloproteinase-1 (TIMP-1), OPN, and insulin-like growth factor binding protein (IGFBP)-3, according to the manufacturer's instructions (catalog no. LXSAMSM; R&D Systems). Metalloprotinease (MMP)-2, MMP-3, and MMP-8 levels were detected using Mouse Magnetic Luminex Assays (EMD Millipore). IL-1α, IL-6, CXCL1, and CCL2 levels were determined using Magnetic Luminex Assays (catalog no. 12002798; Bio-Rad Laboratories, Hercules, CA, USA). The concentration of each candidate protein is expressed as pg analyte/mg total protein.