Immunohistochemistry of frozen sectioned retinas was performed as previously described.
22 Brain was isolated after perfusion fixation using 4% PFA and fixed overnight at 4°C in 4% PFA. Fixed brains were subjected to sucrose replacement and sectioned by either 10 or 16 µm thickness. Primary antibodies are mouse anti-Brn3b (1:500; Santa Cruz Biotechnology, Dallas, TX, USA), -AP-2α (1:50; DSHB, Iowa City, IA, USA), –glial fibrillary acidic protein (1:400; Sigma-Aldrich), -pERK1/2 (1:500, Cell Signaling Technology, Danvers, MA, USA), -Rhodopsin (1:200; LSL, Tokyo, Japan), Ki67 (1:100; BD Biosciences, Franklin Lakes, NJ, USA), rat anti-CD68 (1:2000, BIO-RAD, Hercules, CA, USA), rabbit anti-Calbindin (1:500), Iba1 (1:1000, FUJIFILM Wako Pure Chemical, Osaka, Japan), Recoverin (1:1000; Abcam, Cambridge, UK), active Caspase3 (1:250; Promega, Madison, WI, USA), -Tmem119 (1:250; Abcam), -NeuN (1:1000; Abcam), sheep anti-Chx10 (1:500; Exalpha Biological Inc, Shirley, MA, USA), and chicken anti-GFP (1:2000; Abcam) antibodies. The primary antibodies were detected by appropriate fluorescent conjugated secondary antibodies (Alexa Fluor 488, 594, or 680; Thermo Fisher Scientific, Waltham, MA, USA). Stained sections were observed by Axio Imager M1 microscope (Carl Zeiss, Oberkochen, Germany) or Axio Imager M2 microscope (Carl Zeiss) with AxioVison ver.4.9.1.0 software (Carl Zeiss). Orthogonal images were taken by LSM710 confocal microscope (Carl Zeiss). Z-stacked images were taken at intervals of 1 µm with ZEN 2009- and ZEN 2.3 lite-software (Carl Zeiss).