Cell morphology was assessed using an Olympus IX73 microscope (Olympus America Inc., Center Valley, PA, USA). For western blotting, cells were washed and mixed with 2x SDS loading buffer (0.125M Tris-HCl, pH 6.8, 20% glycerol, 4% SDS, 0.004% bromophenol blue and added immediately before use with 0.1M DTT to generate whole-cell lysates as described.
30 The cell lysates were separated by molecular weight via electrophoresis on an 8% denaturing gel and transferred to nitrocellulose membranes. Ponceau S (#P7170; Sigma Aldrich) staining and β-Tubulin (1:5000; #sc-166729; Santa Cruz Inc., Dallas, Texas, USA) were used to verify that the same amount of protein was loaded in each lane.
Non-specific protein binding to the membrane was blocked using PBS containing 0.1% Triton-X100 (PBS-T) and 5% nonfat dry milk (#sc-2325; Santa Cruz Inc.). In order to maximize efficiency, membranes were often cut into pieces, each with a specific molecular weight range encompassing the target of interest; this allowed for multiple targets to be probed on a single blot without stripping and re-probing. Blots were incubated overnight at 4°C containing primary antibodies to the following targets at the dilutions indicated: Type 1 collagen (COL1; 1:2000; no. LF-68, kindly provided by Dr. Larry W. Fisher, NIH, Bethesda, MD, USA), total Fibronectin (t-FN; 1:2000; #H-300; Santa Cruz Inc.), α-SMA (1:10,000; no. MA5-11547; Thermo Fisher Scientific, Waltham, MA, USA), total SMAD 2/3 (1:2000; no. 8685; Cell Signaling Technology, Danvers, MA, USA), phosphorylated small mothers against decapentaplegic 3 (SMAD3) (S423+S425; 1:1000; no. P00059-1; Boster Technology, Pleasanton, CA, USA), phospho-p46/54 JNKThr183/Tyr185 (1:1000; no. 4671; Cell Signaling Technology), phospho-p38 MAPKThr180/Tyr182 (1:1000; no. 9215; Cell Signaling Technology), phospho-p44/42 MAPKThr202/Tyr204 (1:1000; no. 9106; Cell Signaling Technology), phospho-AKTSer473 (1:1000; no. 4060; Cell Signaling Technology), total-p46/54 JNK (1:1000; no. 9252; Cell Signaling Technology), p-Drp1Ser616 (1:500; no. 3455; Cell Signaling Technology), total-Drp1 (1:1000; no. 611112; BD Biosciences, San Jose, CA, USA), Opa1 (1:1000; no. 612606; BD Biosciences), Mfn1 (1:1000; ab57602; Abcam, Boston, MA, USA), Mfn2 (1:1000; no. M6319; Sigma Aldrich), and β-actin-HRP (1:5000; no. sc-47778; Santa Cruz Inc.). Commercial antibodies have been validated for target specificity by the manufacturers. The custom antibody for COL1 has been validated through extensive use and is currently distributed as an industry standard by Kerafast (Boston, MA, USA).
After several washes in PBS-T, secondary antibodies (anti-mouse IgG or anti-rabbit IgG-horseradish peroxidase; GE Healthcare, Chicago, IL, USA) were applied for one hour at room temperature. Bands were detected by Western Lightning plus-ECL (PerkinElmer, Waltham, MA, USA) or SuperSignal West Dura Luminol/Enhancer Solution (ThermoFisher Scientific). Finally, the membranes were scanned with a Chemi-doc machine (Bio-Rad, Hercules, CA, USA), and the resulting images were imported into Image J (NIH) for densitometric analysis, performed using standard protocols as previously described.
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