An advantage of the stretched/spatially normalized format is that the EZ is positioned in the same place for each image. To generate the EZ reflectivity profile shape, the initial image is resized to a width of 100 pixels and a height of 259 pixels using a bilinear interpolation; signal intensity is also set to a fixed value (macro for ImageJ; National Institutes of Health, Bethesda, MD, USA). A fixed-size region of interest is then positioned to span 350 to 624 µm from the optic nerve head on the inferior or superior sides using two separate ImageJ macros. These steps are performed to take advantage of a built-in function within ImageJ (Plot Lanes) for drawing reflectivity profiles. Next, a baseline is hand drawn, and the wand feature is used to define the EZ region of interest. Because the examiner in this study was not masked during this process, we also analyzed the data using an unbiased approach in which MATLAB code (MathWorks, Natick, MA, USA) determines the baseline for EZ reflectivity profile shape analysis from the initial, spatially un-normalized images. The two approaches reached the same conclusion (
Supplementary Fig. S1). Thus, the fixed region-of-interest approach is not a necessary criterion for measuring EZ aspect ratio. In all cases, the shape of this EZ reflectivity profile is summarized using the Fit Ellipse command in ImageJ (please note the word “fit” may be somewhat misleading; see below). In the results window, the value under the column marked “round” is the minor-to-major aspect ratio for the fitted ellipse. The EZ reflectivity profile shape (i.e., OCT signal magnitude along the length of the EZ, illustrated in
Fig. 2B) was extracted using ImageJ macros.
70 The magnitude values used to generate the EZ reflectivity profile shape are from the Bioptigen system.
36 The EZ reflectivity profile shape was determined not by fitting to the EZ region but rather after converting/transforming the EZ profile into an ellipse with the same direction and area in order to determine its minor-to-major aspect ratio; this process is described at
https://imagej.nih.gov/ij/source/ij/process/EllipseFitter.java and more formally in the literature.
70,71 In this study, we chose to use the ellipse aspect ratio, a commonly used shape descriptor; whether it is an optimal shape description for the EZ reflectivity profile shape is not yet clear.
71 Also, our experience to date is that the EZ reflectivity profile shape is not a function of ELM-RPE thickness, an impression supported by the data in this report (see below).