To further demonstrate the mechanism of BMP-4 and BMP-7 in capsular opacification formation, we assessed global gene expression changes by transcriptomic profiling. The transcriptional profiling of the BMP-treated and control groups was visualized in the form of a principal component analysis graph and volcano plots (
Supplementary Fig. S2). A GO enrichment analysis showed that DEGs were enriched in biological processes, including unsurprisingly, cell migration and cell differentiation. More interestingly, the Notch pathway was also identified as one of the top signaling pathways (
Figs. 2A,
2B). The heatmap of DEGs related to the Notch signaling pathway, cell migration, cell proliferation, and cell differentiation induced by BMPs showed a similar pattern (
Fig. 2C), indicating an overall functional redundancy between these ligands in the regulation of these processes. Among the DEGs in the heatmap, Nfkbia,
42–44 Kit,
45,46 Cbfa2t2,
47,48 and Fat4
49,50 were related to the Notch signaling pathway and real-time PCR (RT‒PCR) results consistently showed that these genes were downregulated by BMP-4 and BMP-7 (
Supplementary Fig. S3). The crosstalk between BMPs and the Notch pathway has not been extensively investigated in capsular opacification formation, so we decided to focus on this particular signaling pathway and test Notch and its downstream target genes to verify the transcriptomic data. The inhibitory effect of BMPs on Notch was at the protein stability level rather than the mRNA level, because the mRNA level of Notch could not be affected by BMP-4 or BMP-7 (
Fig. 2D). In contrast, BMP-4 and BMP-7 suppressed the expression of the Notch1 and Notch3 protein (
Figs. 2E,
2F) but had no effect on the Notch2 protein (
Supplementary Fig. S4). The most extensively studied and understood targets of Notch are hairy and enhancer of split (Hes) and Hes-related with YRPW motif (Hey),
51 and seven Hes genes and three Hey genes have been identified in mammalian genomes.
52–55 The RT‒PCR results showed that BMP-4 and BMP-7 decreased the mRNA levels of Hes1, Hes5, Hes6, Hes7, Hey1, and Heyl, and increased that of Hey2 (see
Fig. 2D). Hes2, Hes3, and Hes4 were expressed at low level in mouse lens (CT value > 35). These findings indicated that BMP-4 and BMP-7 inhibited capsular opacification formation by regulating the Notch signaling pathway.