Ocular surface cell samples were collected from both eyes of participants via IC using an established standard operating procedure.
20,21 IC samples were not collected until at least 20 minutes after the final clinical test. Eyes were anesthetized with 0.5% proparacaine hydrochloride ophthalmic solution. One-half of a sterile 0.20-µm, 13-mm polyether sulfone filter membrane (Supor 100, 13-mm diameter, pore 2 µm; Gelman, Pall Sciences, Fort Washington, NY) was placed onto the superotemporal area and then placed into a tube containing 2 mL of cold sterile PBS with 0.01% paraformaldehyde. This was repeated with the second half of the filter paper for the inferotemporal area of the bulbar conjunctiva of the same eye. Both pieces of filter paper from the same eye were placed into the same tube. This procedure was then repeated for the other eye with the filter papers placed in a new and separate tube. Each eye had a separate tube to allow for comparison with that specific eye's clinical examination scoring of dry eye signs. After completion of the last sample, a drop of prophylactic antibiotic (0.5% moxifloxacin hydrochloride) was administered to the patient's eyes. The tubes were stored and shipped at 4°C and processed within 30 days of collection. Cell processing was completed at the Ocular Biomarker Laboratory located at the Icahn School of Medicine at Mount Sinai, New York, New York.
Ocular surface cells were harvested from filter paper by shaking tubes at 400 rpm for 20 minutes at 4°C, and then vortexed for 20 seconds. An additional 2-mL sterile PBS with 0.5% BSA (buffer) was added to each tube. Filter papers were then removed and discarded. Next, the tubes were centrifuged at 1000 rpm for 10 minutes. Supernatant was aspirated leaving behind 100 µL of liquid. Next, 50 µL of antibody cocktail containing phycoerythrin-labeled anti-EpCAM (epithelial cell marker) antibody (BD Biosciences, Franklin Lakes, NJ, USA), pacific orange-labeled anti-CD45 (panwhite blood cell marker) antibody (Invitrogen, Waltham, MA, USA), Texas Red-labeled anti-CD8 antibody (BD Biosciences), PE-Cy5-labeled anti-CXCR3 antibody (BD Biosciences), PE-Cy7-labeled anti-CD127 antibody (BD Biosciences), pacific blue-labeled anti-CD3 antibody (BD Biosciences), brilliant violet 650-labeled anti-CD25 antibody (BD Biosciences), FITC-labeled anti-CCR6 antibody (Biolegend, San Diego, CA, USA), AlexaFluor-labeled anti-CD4 antibody (Biolegend), APC-Cy7-labeled anti-CD11c antibody (Biolegend), brilliant violet 605-labeled anti-CCR4 antibody (Biolegend), and additional antibodies not discussed in this paper. CD45
+/CD11c
+/CD3
– represented dendritic cells (DCs),
22 CD45
+/CD3
+ were T cells,
23 CD45
+/CD3
+/CD8
+ were cytotoxic T cells (Ttox),
24 CD45
+/CD3
+/CD4
+ were helper T cell (Th),
25 CD45
+/CD3
+/CD4
+/CD25
+(high)/CD127
– were regulatory T cells (Treg),
26,27 CD45
+/CD3
+/CD4
+/CXCR3
+/CCR4
−/ CCR6
− were Th1,
28 and CD45
+/CD3
+/CD4
+/CCR4
+/CCR6
+/CXCR3
− were Th17.
29
Antibody concentrations used in the cocktail for a particular antibody lot were based on prior titrations performed with peripheral blood mononuclear cells to determine optimal signal-to-noise ratio. This strategy minimized the noise from nonspecific binding of the antibodies to low-affinity targets and achieved the best signal with the lowest background. Titrations were performed for each new antibody lot. The tubes were then gently vortexed and incubated at room temperature for 20 minutes. The cells were washed with a 2-mL buffer by centrifuging at 1000 rpm for 10 minutes and resuspended in 170 µL of buffer for flow cytometry.