In a first step, we used the spheroid sprouting assays as functional angiogenesis assays and confirmed that OSM enhanced VEGF-induced sprouting by 62% on average (
Fig. 1A). On a transcriptomic level, HUVECs co-stimulated with OSM and VEGF showed a clear shift in the transcriptome compared to cells exposed to VEGF alone, represented by a good separation in principal component analysis (PCA) (
Supplementary Fig. S1A). In total, 1707 genes were considered upregulated by the OSM+VEGF treatment, and 1622 were downregulated (
Fig. 1B); 1950 DEGs had an absolute log
2 fold change > 1. All DEGs, including their log
2 fold changes and adjusted
P values can be found in
Supplementary File S1. Using a GO term enrichment analysis for biological processes to screen for patterns in the transcriptomic changes, various inflammation-associated GO terms were enriched significantly for the OSM+VEGF-treated samples, as indicated by “inflammatory response” (GO:0006954) ranking among the top five most enriched terms (
Fig. 1C). Prominent downregulated terms were “cell morphogenesis,” “actin filament-based process” (GO:0030029), and “actin cytoskeleton organization” (GO:0030036) (
Fig 1C). More details on the DEGs linked to this enrichment analysis can be found in
Supplementary Tables S6 and
S7. Surprisingly, the GO term “angiogenesis” (GO:0001525) was also depleted in response to OSM treatment in GSEA (
Supplementary Fig. S1B). As OSM is known to signal through the STAT3 and ERK pathway,
17 we then investigated whether a gene signature of these pathways could be observed in the RNA sequencing dataset. In GSEA, the hallmark STAT3 gene set showed pronounced enrichment for OSM+VEGF-treated samples (
Supplementary Fig. S1C), with high expression of typical STAT3 downstream targets in the leading-edge genes such as
SOCS3 (
Supplementary Fig. S1D). In contrast, the ERK signaling pathway and its downstream targets were not significantly enriched in the OSM+VEGF group represented by a GSEA for “ERK1 and ERK2 cascade” (GO:0070371), stressing the importance of STAT3 in the signaling process (
Supplementary Fig. S1E). To further validate these data, we performed qPCR with selected DEGs which are also known STAT3 targets.
SOCS3 and
LIPG, which were defined in the RNA sequencing as DEGs, were also significantly altered in their expression level in classic qPCR (
Supplemental Fig. S1F), giving us confidence in the gathered data and the role of STAT3 in OSM signal transduction. qPCR data for the same targets in HRMVECs revealed similar tendencies, suggesting that observed changes in gene expression also translate to microvascular endothelial cell types (
Supplementary Fig. S1F).